AMCG00016685


Basic Information

Item Value
gene id AMCG00016685
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27528826 ~ 27538723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016685
GCTGAAATGAAGGCGAGAGGTGAGCTGGAGAGCGGACGGGGTAATGGGGACGGGGACAAAACATCGAGTAAAAGCCGTAGTCTTCACCCGGGACACCCGCGTCCAATGAAAAACACGACAGGCGCCTTCCAGACCTCGAAATGGCGCACTTCTGTCCCCGCTAGCTGGTTTCGTGTAGGAATGGCGAGCCAATAGAAATgcgtgttattgtttttgtcctctctctccactgcaGATCTAAAATGGAGGAGCAGTGACGGGACTCGGCTGTCCTTACgcacagtgatttaaaaaaaagagagaaagaaagaaagaaagaaaggcacTTCACACCGGAGAAGAACAAGCTAGCTCCCAGGACGAGCAGCGGCGAGGCGATCCGGGCGAGAGGAGGCGAAATGGAGGGCTCGACCCGCAGAGCCCAGGCCGTGTAGACGGAATTTAAAACCGTGCGACAAGATACCAAATACAGCGTCATTCACTAACAGACGAGCTCGTATGGGGAGGGCGAGAGCTGGTTGACGTTACTGCCCCCTCCATCTTCAAAATTAGACGCGTGTTCCTGGGAGGAGTGGGGCGCTGTGTGACGGGCAAGACCGGGCTGTGGGGGCGCTGGCTGGCTGGCCGGCTGGCTGGCGGGGGGCGCTGGGATGGTGTAGGGGTGGTTAATGTAGTAAGCCATGAATATGAGATCCACTGTGTTCGCCAGTGGTGGGTACAAGCTCGACACGGAGAAAAGCGAGTTGGAGAGAGCGCAGGCGTGCGGTGGGACCCCCAGCATCGGCGTTAAGAGGGAGCCCTGTGATTACGTCATCGACGTGCACGACGTGCTGAGCGACGTGCACGACGTCCTAGGCGACATCCACAACAGCGGCGTCCAGCAGCAGCACGCCAGCAAAACCAAGAAACTGAAGGAGAACCACGGCGGTAAAGCAGCCCGGATCCCCGTCGCGGTTGGGCTGAGCAAGTCGCAGGAGGAGAACCGGATGAGCCTGGGGACCTTGCCCGCCCCGGGGAGACAGATGGGGGGCGAGGGCACCCCTGTAAAGAGCAAGACCCTTTTCGGACAGAGCAACAGCATGGGCAAGAGCGACCCGGCGGCGGTGAACGCCAACAATAATTCGCGGGACGCCGTCGCCGAGGGGGCCGACAGAGGGGCCCCGGCGGCCGGGGCGCTCAACACGGCCACGCTGGAGCTGAGCTCGGAGGGCAAATGGAAGAACGTGAAGAAAGTGCCCAGCCACAGCCCCACGCAGGCCACCTGCCTCCGACAGATCCTGCTGCTGCAACTGGACCTGAtcgagcagcagcagcagcagctacagtCCAAGGACAAGGAAATAGACGAGCTCAAGGCCGACAAGGAGACGTTGTTGGCACGCATCGAGCGCATGGAGAGGCGGATGCAGCTGGTGAAGAAGGATTCCCGGGACAAGCAGAGGCTCTTCCAGCCACTGGACTGCGAGGACCGGGGGGCGGAGCAAGATACACTCGAGCGGGAGGAGTTTCCTGAGGGTGGAGGGTCCGAGAGCCCCCAGATCCACAGCGCCAAGCCCCTCCCCTTTGGCCGAGGTGGCAAGGGCCATAAACGAAAGTTCTGTTTTCTGGACTCCAAGACGCCCAAATCACGGGGCAAGTCGTCAAAGTTCTCCCCGCAGAAGGAGTCCGAGTTGGAGGCGGGCTCTCCGTTCCAGCGGGAGCTGCGCAGCAAGGAGACGCCTGAGAAGGCAGGGGGTGGCCGGCTGCAGGGTGATGCATCTACACTCTCTCGGGGGGGCTCCCAGGGCCTGCACATCAAAGAGGAGTCCCAGCCGGCCACTGCGGAGATGGAGGAGCTGCCATACATGGCCACCACGGAGATGTACCTCTGCCGCTGGCACCAGCCGCCCCCCTCGCCCCTCCGAGAGACATCGCCCAAGAAGGAGGAGATTGTGGCCATCCCTTCCTGGAGGGAGAACACCATGGAGCCCCTGAAAGATGCGATGGCGTCGGACATCCCCGAGAATTTGGACGACGGCGTGTTTCTGAAGCGGCACGCAAAACTGGAGTTGGACGAGAAGAGGAGGAAAAGGTGGGACATCCAGCGGATCAGGGAGCAGCGCATGTTCCAGCGGCTGCAGCAGCGTATGTACAAGAAGAAGGGCATCCAGGAGAGCGAGCCCGAGGTCTCGTCCTTCTACCCTGACGCCGATGACGTGGAATCCCTGATGATCACTCCCTTCCTGCCAGTAGTTGCTTTTGGACGGCCGCTGCCCAAACTGACCCAACAGAACTTCGAGCTGCCCTGGCTGGACGAGCGCAGCCGCTGTCGTATCGAGATGCAGAAGAAGCAGACGCCTCACCGGACCTGCAGGAAGTGATGTCCCGCTCGCTGACGTCTGGGttccttttttttgtgggggggggggttagttttattggatgtttttttgtttttgtttttttgtagagAACTAAAACCTATCCTTATCAATGGACAAAAGGATCTGGGAGACgaaaagcaagcaagcaaacaaacaacaaaagacaTTTTGATTTCGAGGATGGAGGGGTTGGGGGAGGCGGACGTACGCAGACCACCTTGCCCCCGCTCTGCTGATGTAGCACGGTACTGGTAGCGTTCCTGTGAGATCCCACTGCATTGGCAGTGGGCAGGCCTGCTCTGTGGGGTGACTGGGGGGGCACAGGGGCAAATCCAGAGCAAGGAGCCTGCAGGCTGCTCTGTGGACCTGGGGGGCAAGGGCAAGAAAAGATCTaaacaagaaagcaaacaagatagaactgtctgtttttaaaatctccTTTAAGTAGGAAGACCTGAGAAGGAAAACCATACTGGTGGTTCACTCCTAAAGACTGGTGGTGCTGCGGCAGCTGGAAGCCTTGGTCTCCACTGGGGGGTCCGGCTCTGGAGTGGTGCTGCAGCGCTGTTGTATGAagaaggttgttgttttttatgggGGGGGACTGATTTTGTTCCTTCCGGACTCTTCCTTGTTCCTGCGGTGCTGTTGCACGTGTTGCAGCCTGAGAACGAGAGCCCCACACCCCACCACCACGGCCCTCCACGATCGCAGTGCTGCCGAGGCGTGCCGTCACAGTGCCCAGTGTGCCGCAGGGGTCCGGTCTGAGGATGAGCGGATCGCTTAGTGTGCGAATGTGGGGTCTGACCTCTGCCCCCGGAAGCTTCTATTTCTGCTTGTTTCTTGTGCATGTTAAAATACAGGGTGCACCcgtgtaagtgtgtgtatagAATGTAAAGGGGGATTATAATTTCTGTACTCTGCACC

Function

GO: NA

KEGG:

id description
K13163 MSL1; male-specific lethal 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016685 True 3290 mRNA 0.58 10 27528826 27538723

Neighbor

gene id symbol gene type direction distance location
AMCG00016684 NA coding upstream 20590 27505189 ~ 27508236 (+)
AMCG00016686 LOC101072148 coding upstream 32481 27484633 ~ 27496345 (+)
AMCG00016682 igf2bp1,LOC108412303,LOC107585078,LOC107740658,LOC107717213 coding upstream 76827 27450004 ~ 27451999 (+)
AMCG00016679 NA coding upstream 101792 27425680 ~ 27427034 (+)
AMCG00016678 NA coding upstream 112816 27414210 ~ 27416010 (+)
AMCG00016687 rapgefl1 coding downstream 37810 27576533 ~ 27584981 (+)
AMCG00016689 NA coding downstream 68493 27607216 ~ 27610772 (+)
AMCG00016696 NA coding downstream 225851 27764574 ~ 27764813 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding downstream 271925 27810648 ~ 27817193 (+)
AMCG00016697 NA coding downstream 283950 27822673 ~ 27823994 (+)
G15025 NA non-coding upstream 158688 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 246257 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 254529 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 813025 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 815697 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 578195 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 579820 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 621942 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 687119 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 896261 28434984 ~ 28435256 (+)
AMCG00016663 NA other upstream 534878 26966297 ~ 26993948 (+)
AMCG00016635 NA other upstream 871401 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 980614 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 1029584 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 1095170 26427339 ~ 26433656 (+)
AMCG00016683 NA other downstream 3763 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 49756 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 74382 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 238704 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 290545 27829268 ~ 27833537 (+)

Expression


Co-expression Network