AMCG00016687 (rapgefl1)


Basic Information

Item Value
gene id AMCG00016687
gene name rapgefl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27576533 ~ 27584981 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016687
ATGGAAAAGTACCAGCGACACTGTCAACCCCACAGTGCCAGTGAAAATGGGCGGAGTCAGAGGACGTGTCTGagctgccccctccccctcccgcCTCTATCCTGCCAGCAGGGCTTGATGCCAGCATCCAGTTCCAGTAGCCCCACTCTGTTCCTGTCTCTTATGAAAAGTTCTCACCTGTCCTCGGAGGACTCCAGGTTTCCTTTGCATGCGGAGGGGCAGTCGGGGTGGTTTTGCTGTCTGCGgtctgggctgggctgggccgGGCGCAGTCTCGTGGTGTCTCTGCAGACCCTGCTGGATGACTTCATGCTCACACATCCCATCTTCCTGCCGCCCGACAAGTTCCAGCAGGTCCTACTACAACAGTTCCGCGCCGACGGGAAGCAGAGCGAAGGCTGGCAGGGCTGGGACGGCGCGGACAGGAAACAGACGGTGCTGAGCGTGGCGTTCCGCTACCTGGAGACGTACCgagagctgctgcaggaggaggGAGAGCGATCGCACCAGTTCCCCAAGGAGCTGTACCTGTGTGCTGCACAGGAGCTGAGCCGCTACCCCGAGCTGGTAGAGGATGTTCTCAAACTACAGCGTTGGACTGAGATCCTGCAGAGCCAGGTGGAGGAGGACAGAGACAGCAAGAAGAAGCAGGTGCGACCGCTTTTCAGACACTTCCGCCGCATCGACGCCTGTCTGCAGCCGAGAGAGGCCTTCCGAGGGTCTGACGAGATCTTCTGCCGGGTTTACACACCGGACCACTCGTATGTGACGATCCGCAGCCGGCTGTCCTGCAGCGTGGGCGAGATCCTGGCGCTGGTGCGGGAGAAGCTGCAGTACAGCGAAGAGCAGCCCGCCAGGCAGGGGGCGCTGGTGTTGGTCGCGGTCACCTCCGCTGGGGAGAAGGCCCTGTTCCGGCCCAGCGATGAGGCGGTCTTCACCACGCTGGGTGTCAACACGCATCTCTTCGCCTGTGAGCCGCAGGAACTGGAAACACTGCTGCCCCTGCCTGAGGAGATCCACTGGTCACCTGGTGACAGCAAACTGCATGACATGAGTGCTGAGGAGGTGTCCAATCAGCTGGTGGCATTCGACTGGGAGCTGTTCAGCTGTGTGCATGAGGTGGAGTTCGTGTGCTACGTCTTCCACGGGGAACAGGCTCGCTGGCGCCCCCTGAACCTGGAGCTGGTACTGCAGCGCTGCAGCGAGGTGCAGCACTGGGTAGCCACAGAGATCCTGCAGTGCCAGTCCCTGCCCAAGAGGGTGCAGCTGCTGCGCAAGTTCATCAAGATCGCAGCACTGTGTAAGCAACAGCAGGACCTGTTGTCATTCCTGGCCGTGGGGCTGCCGGGGAAGTTTAAGAAGCAGTTCCAGCAGTTTGAGAGCACTGTGGACCCGTCCAGGAACCACAAGTCCTACCGTGACCTCATCTCCAGTCTGCGCCCGCCCGTCATCCCCTTCACCCCgctcctgctgaaagactTGACATTCCTGCATGAGAGCTGCAAGACCTTCCACGGAGACCTGGTCAATTTTGAGAAAATGGTGATCGACAATCAGAACCTCCTGTTCAACATGTCCTGCAAGCTGGAGCCCAAAGATGTTTGA

Function

symbol description
rapgefl1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RAPGEFL1 (Rap guanine nucleotide exchange factor like 1).

NR:

description
rap guanine nucleotide exchange factor-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016687 True 1605 mRNA 0.60 15 27576533 27584981

Neighbor

gene id symbol gene type direction distance location
AMCG00016685 NA coding upstream 37810 27528826 ~ 27538723 (+)
AMCG00016684 NA coding upstream 68297 27505189 ~ 27508236 (+)
AMCG00016686 LOC101072148 coding upstream 80188 27484633 ~ 27496345 (+)
AMCG00016682 igf2bp1,LOC108412303,LOC107585078,LOC107740658,LOC107717213 coding upstream 124534 27450004 ~ 27451999 (+)
AMCG00016679 NA coding upstream 149499 27425680 ~ 27427034 (+)
AMCG00016689 NA coding downstream 22235 27607216 ~ 27610772 (+)
AMCG00016696 NA coding downstream 179593 27764574 ~ 27764813 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding downstream 225667 27810648 ~ 27817193 (+)
AMCG00016697 NA coding downstream 237692 27822673 ~ 27823994 (+)
AMCG00016703 NA coding downstream 277208 27862189 ~ 27871186 (+)
G15025 NA non-coding upstream 206395 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 293964 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 302236 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 860732 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 863404 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 531937 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 533562 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 575684 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 640861 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 850003 28434984 ~ 28435256 (+)
AMCG00016683 NA other upstream 23413 27542486 ~ 27553120 (+)
AMCG00016663 NA other upstream 582585 26966297 ~ 26993948 (+)
AMCG00016635 NA other upstream 919108 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 1028321 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 1077291 26489938 ~ 26499242 (+)
AMCG00016691 NA other downstream 3498 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 28124 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 192446 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 244287 27829268 ~ 27833537 (+)
AMCG00016706 LOC102299446 other downstream 251532 27836513 ~ 27839103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026313 rapgefl1 coding NC_007114.7 CM002887.2 23334967 ~ 23407720 (-)