AMCG00016690


Basic Information

Item Value
gene id AMCG00016690
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27613105 ~ 27626090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016690
ATGAAGGATCAGAACACAGAGCAGATAGAGAAGATCCTACAGGAGGCCCCGGTAGCCCGGCAGGCCCTCCTGGACAACTACAGCAACCTGCACAAGGTGGCCGACTACTGCGAGACCAACTACTTGCAGGTGGATGACCAGAAGCAGGCCCTGGAAGAGACCAAGAAGTTTGCCACGCAGTCCCTGGCCAGTGTGGCGTACCAGATCAGCACCTTGGCGTCCAACGTTCTGAAGCTGCTGGACGCCCAGACTGATGGTCTGCGCCAGATAGAGTCCTCTGTCCACCTCCTCTCCCAGACGGTGGACATGCACCGCGAGAAGGTGTCCCGGCGTGAGATCGGCGCGTTCACCATGCCCAAGAGGCTCCCGCGCCACCAGAAGGTCATCCCCCCTGCCGCCAGCCCCGAGCAGAAGCCCCGTTACTCCCGAACACCAATCAACTTTGCAGGGCTGGACACCTTGGGCCACGGCATGAAGGACTCAAGCAAGCAGCTCGGTCGGACAGGAACCATGACACGCAAGCAGTCGAACCGGGAGGCGGGAGGAACTCTGGGGAGGAGTGCCCGAGTGCCCGAGCCAGTGCAGTGCCCCGTGGCCCCCTCTTTGTCTCTGGCGGAAGAAAGTGGCTTCCATCTCCCCATGGTATCAGACGTGCTCCCCCCCCCGCCGCTGACAGACGGCTTCGAGCTCCCGGTACCCCCCCCTCCGCCAGGCAGCGAGTTCAGCTCAGTCAtcatcccccctcccccgccaTACCCCCCCCCTCTAGCCCCCCTGGCCCTGCTGACCCCCACATTGGGCTCTGCCTCGCGGCTCCGGCGCTTCGACATGGATTTCCaggcccctcctcctcccccagaCCTGACGGGACACTTTGTGGATGACAGTgggccccccccacccccgcctaTAGACTATGACCCTGCACTACCCGTCAACTATGAGGAGAAAGTCCTGGCCCTGTACACCTACAGCCCCAGCAAGCCGGACGAGCTGGCCTTCCAGGAGGGAGACGTGATCTACGTCACCAAGAAGAACGAGGATGGCTGGTACCAGGGCGTCTTCAACGGGAGGGAAGGCTACTTTCCGGCGACCTACGTGACCTCGGCCAGCTAACCGCCCCGGCGAATGGAGATGGAGCCAAAAAAACAGCCCAGGGGACACACCAGCATGGGGGCTCATCAGTGAAGCCCCAGCTAGACTAAGTGAATGTGGGTTGATTTTAAACATGGGGATGGGGGAGGGATACAGGTAGCGGAGGGCGGCCAGGATTGTATTCTTACCCAcagaatttgttaaaaaaaaaaattatatatatattttaaactaactGAAGGCAGCTATCTTTTTACGTTCTCCAGCCTTAATTGTCTACCATGTTTAACGCAGTAACCTCGGCTACTTTATGATTattggtaattaaaaaataactaataaataaatacaaataaataaaatacaaaacaaaacagaaagggTGGCCTTATTGTGATTGGACTGTTTCAGTGCAATTGTGCTCAACTATTCACAGTGCTAATATATAATCAGATTTCACAGAGAGATGTAATATATAACTCAAGGTTTTCAAGCGAGGATGATTGTTCTGCAGTGAATTTTTTAAGTTAAGTTTTAATGAAGCCCTTGGTTATGGAGGATATAACTTGTTTCTCctctcacttttttttgttattatttttaatttatttgtgcagCTGTCTTTAATGTTGTATgtcttgattttaatttattgtgctTACAGTTGTGTCTGTACCCCCCCACCGTGTAACCTGACCTCTTGTTTTTGCCATGTCATCTTCACAGTCATGTAACAGCTCCGACACTCGCAGTCCCTGATCACCTCCAATACGAGAATTAAAAGCCATTAACACCCAGTGAAATGTTGCggttttattgatgttttgctCTGGTTTG
>TU18724
GTCACCCTGAATCACAAGCAGTTAACAGCTTCTCCTTTCTTCAGTCCGCGCAGCACTAACAGCAGCCTCTCTGGGCTCTGCCTCCGCGCTGCTCTGTCTGTCCCTGCAGCGTTTCTACAGccccctttttcatttttctttttccctggACATTAAAACCTCTCTTGGGAGCAGTGAGGAGGCAACTGGAGACACCATGAAGGATCAGAACACAGAGCAGATAGAGAAGATCCTACAGGAGGCCCCGGTAGCCCGGCAGGCCCTCCTGGACAACTACAGCAACCTGCACAAGGTGGCCGACTACTGCGAGACCAACTACTTGCAGGTGGATGACCAGAAGCAGGCCCTGGAAGAGACCAAGAAGTTTGCCACGCAGTCCCTGGCCAGTGTGGCGTACCAGATCAGCACCTTGGCGTCCAACGTTCTGAAGCTGCTGGACGCCCAGACTGATGGTCTGCGCCAGATAGAGTCCTCTGTCCACCTCCTCTCCCAGACGGTGGACATGCACCGCGAGAAGGTGTCCCGGCGTGAGATCGGCGCGTTCACCATGCCCAAGAGGCTCCCGCGCCACCAGAAGGTCATCCCCCCTGCCGCCAGCCCCGAGCAGAAGCCCCGTTACTCCCGAACACCAATCAACTTTGCAGGGCTGGACACCTTGGGCCACGGCATGAAGGACTCAAGCAAGCAGCTCGGTCGGACAGGAACCATGACACGCAAGCAGTCGAACCGGGAGGCGGGAGGAACTCTGGGGAGGAGTGCCCGAGTGCCCGAGCCAGTGCAGTGCCCCGTGGCCCCCTCTTTGTCTCGTGGGCCGTCTNNNN

Function

GO: NA

KEGG:

id description
K23710 ABI3; abi gene family member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016690 True 1932 mRNA 0.52 9 27613301 27626090
TU18724 False 821 TUCP 0.35 5 27613105 27619919

Neighbor

gene id symbol gene type direction distance location
AMCG00016689 NA coding upstream 2333 27607216 ~ 27610772 (+)
AMCG00016687 rapgefl1 coding upstream 28124 27576533 ~ 27584981 (+)
AMCG00016685 NA coding upstream 74382 27528826 ~ 27538723 (+)
AMCG00016684 NA coding upstream 104869 27505189 ~ 27508236 (+)
AMCG00016686 LOC101072148 coding upstream 116760 27484633 ~ 27496345 (+)
AMCG00016696 NA coding downstream 138484 27764574 ~ 27764813 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding downstream 184558 27810648 ~ 27817193 (+)
AMCG00016697 NA coding downstream 196583 27822673 ~ 27823994 (+)
AMCG00016703 NA coding downstream 236099 27862189 ~ 27871186 (+)
AMCG00016704 NA coding downstream 255350 27881440 ~ 27888212 (+)
G15025 NA non-coding upstream 242967 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 330536 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 338808 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 897304 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 899976 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 490828 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 492453 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 534575 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 599752 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 808894 28434984 ~ 28435256 (+)
AMCG00016691 NA other upstream 8226 27588479 ~ 27604879 (+)
AMCG00016683 NA other upstream 59985 27542486 ~ 27553120 (+)
AMCG00016663 NA other upstream 619157 26966297 ~ 26993948 (+)
AMCG00016635 NA other upstream 955680 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 1064893 26527319 ~ 26548212 (+)
AMCG00016699 LOC106607176 other downstream 151337 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 203178 27829268 ~ 27833537 (+)
AMCG00016706 LOC102299446 other downstream 210423 27836513 ~ 27839103 (+)
AMCG00016702 NA other downstream 246573 27872663 ~ 27878697 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 338488 27964578 ~ 27998777 (+)

Expression


Co-expression Network