AMCG00016692


Basic Information

Item Value
gene id AMCG00016692
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27643639 ~ 27650849 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016692
ccctccctccctccctcgtgTGTATCTGTGCATCTGCTGTTACAGAGCCTTGCTGGAAGATGTGGCTCCTGCTGCTCCTGGGGGCTGTAGGCCTGGTCCTGGTCCTAGGCTTCACTGCTTATTACCGCATGTTCGGCAGCAAAGTCAGCCCGTTCTCCCTGGACTCGGTGCGCCCGCCCGGGCCGCTGGTGACGGaccagaggcagagagacagagtgctTAAGCAAGGGTTCCGTGCCAACCGGGTGCCGAAGGACCTGGATGCTGTGGTGATTGGCAGTGGCATTGGCGGGCTCACAGTGGCAGCTGTGCTGGCAAAGGCCGGCAAGCGGGTGCTGGTCCTGGAGCAACACGACCAGGCAGGGGGCTGCTGCCACTCCTTTGTGGATAAAGGCTTCGAGTTTGATGTCGGTATCCACTACCTGGGCCAGCTCCACGAGAACAGCCTGCTGCGCATCGTGATGGACCAGATCACCGAGGGGCAGTTGCAGTTCGCACCGCTGGAGCAGCACTACGACACAGTCATCCTTGGGGACAAGCAGAACAGCCGCCGCTACCACATCCACAGCGGCAAGACCGAGATGGCGGAGAGCCTCAAGCGACAGTTCCCTGAGGACACTGAGGCCATCGATGAGTTAATGAGGCTCATGAAGCTCTCCGCCCGCCGCACTCCTCTGGTGGCATCTTTGAAGTTCATGCCACTCTGGTTGGTCAGATTCCTCATCCGTACCGGCATCCTGCACCGCATCTCCCCCATCTACGGCCTGGCCACCACCAGTCACTCCGAGCTGCTGGGGAAGCTCACCCAAAACAAGGACCTGCAGGCCCTGTCCGCATACTTCTTTTACGGTGTGCCTCCTAAAGACTCCAGCTTCCTGATTAATGCCCTGCTGCTGCACCACTACAAACGAGGGGCGTACTACCCCAGAGGGGGGGCCAGCGAGATCGCCTTCAACATCATCCCAGTCATCCAGAAGGCAGGGGGCACTGTGCTGGTCAGAGCTCCCGTTCAGCGAGTCCTAGTGAACCAGAAGGGCACAGCATACGGTGTGACCGTGAAGAAGGGTCAGGAGGAGGTCAGCATCCTGGCCCCAGTGGTCATCTCCAATGCCGGGATGTTCAATACCTTTGAGAAGTTCCTGCCCCCTGAGGTCCAGGCCAAGCCAGAAATTCAGTCCCACCTCGGCATGGTCCAGCATGGCATGGGCTCCTTCCTGGTGTTTGTGGGTCTGGATGGGACCAAGGAGGATCTGGGCATCGTCTCCACCAACTTCTGGATGTATAAACACAACGACCTGGACAAATTGATGGATCACTATGCCTCTCTGGACCGGGAGGAGGTGGCAGCCAACATCCCCATGATGTTCATCACCTTCCCCTCAGCTAAAGACCCCACCTCCAGCATCAGACACCCAGGGAAGTCATGCATGACTCTGCTGACCATGGCTCGCTACGAGTGGTTCGAGGAGTGGAAGGACACCACCCTGCAGAAGAGAGGGCCCGACTACGAGAATCTCAAGATGGGCATCGCCAATGCGCTCCTGGACTGGGCCTGCGAGATCCACCCCCAGATCAGGGAGAAGGTGGTGTTCATGGAAGCGGCCACCCCTCTCTCCAACATGCACTACCTGGGCGCCCCGCGGGGAGAGATGTACGGGGCTGAACACAACCTGGCCAGGTTCACCCCTGAGGTGGTGGCCAGGACCCGTTCAGAGACGCCAGTCAAGAACCTCTACCTGACAGGCCAGGACGTGTTCTGCAATGGGCTGGCGGGGGCACTGCACGGGGGGCTGCTCTGTGCTTCGGCTGTCCTCAACCACATCCTGTACATCGACCTCCTAGCGCTGAAGAAGAGACTGAAGTGGGAGAAGGCCAGGAAACAGGCCTGAGGACCAGGACTCGGCCAGCATCCCCCACTGCACACCCCATCCTCCGGAGCCCAACAGCCCAAGCGTCCCCCGTCCTCTCTGACTGAGAGGAGAACCAACCCCACAGTGAGCCATAGGGTGACTGCAGCCACACTGAGCACTACTGagctaaaaagaaaatgaaaacctcTCGGGTGTGCATTAACCCTCccataagaaagaaagacagaataaGGAGAGCAGCtattttgatattgttttgaTGACAGACCAGCAAGTGGGCTGAAGATCATCTCCAGTCCAATATATCAATTAAAGactgttatattttaaatatattccattCCAATCCTGTATTGCCTGTCCTGGTTATATAACTGCATGCCTGAGAAGATAATAGTGATTAGGCAACCAACCTTTAACAATGCAACAAACCTTGTtactatatttataattttaatagatttttgttttgtttttggttgtaaGCATACGTTTCATTTACATTGtcgttttcttgtttgtttctataCATACTTGTTTTATAgtgcctctgtgtctgtgttttccaCAATAAAAGACCTTGAAACGCTATTAACGAGGTCTTGTGAATTTTGACGCACAAGACCGATATGTCAGTGGGGACATCACATAGAGATTGGACAACAAGGTTGTTTCAAGATGAGAGGTGAGAAGGAGAggaactacattttttttaatagttctttatatttgtgcagttttagtttatgattttcaaataaaatgttgtgtttatttttaccattatcAATGTGCACATTAAGTAGAATTGTCCTGGACTTGTATATACCTAAGTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016692 True 2710 mRNA 0.53 11 27643639 27650849

Neighbor

gene id symbol gene type direction distance location
AMCG00016688 nr1d1,LOC102302421 coding downstream 126666 27509645 ~ 27516973 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding downstream 209779 27430102 ~ 27433860 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 262551 27375965 ~ 27381088 (-)
AMCG00016670 LOC106579309 coding downstream 267939 27370979 ~ 27375700 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 304046 27338007 ~ 27339593 (-)
AMCG00016693 LOC107388104 coding upstream 4899 27655748 ~ 27669412 (-)
AMCG00016694 LOC105013104 coding upstream 50163 27701012 ~ 27707529 (-)
AMCG00016695 NA coding upstream 81466 27732315 ~ 27738429 (-)
AMCG00016700 NA coding upstream 155500 27806349 ~ 27809112 (-)
AMCG00016701 tmem101 coding upstream 189346 27840195 ~ 27842668 (-)
G15095 NA non-coding downstream 90477 27550312 ~ 27553162 (-)
G15079 NA non-coding downstream 101799 27535325 ~ 27541840 (-)
G15075 NA non-coding downstream 218818 27424554 ~ 27424821 (-)
G15074 NA non-coding downstream 227100 27416249 ~ 27416539 (-)
G15073 NA non-coding downstream 227747 27415653 ~ 27415892 (-)
G15165 NA non-coding upstream 143743 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 145934 27796783 ~ 27797008 (-)
G15172 NA non-coding upstream 151280 27802129 ~ 27805042 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding upstream 159789 27810638 ~ 27815464 (-)
G15200 NA non-coding upstream 232790 27883639 ~ 27884430 (-)
G15076 NA other downstream 214988 27424893 ~ 27428651 (-)
G15067 NA other downstream 239717 27401676 ~ 27403922 (-)
G15026 NA other downstream 273500 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 364305 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 639932 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 479163 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1130623 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1551023 29201872 ~ 29225587 (-)
G15706 NA other upstream 2550610 30201459 ~ 30202351 (-)
G15787 NA other upstream 2875443 30526292 ~ 30529500 (-)

Expression


Co-expression Network