AMCG00016693 (LOC107388104)


Basic Information

Item Value
gene id AMCG00016693
gene name LOC107388104
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27655748 ~ 27669412 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016693
ATGGAGAGAGAATTGGAATGTAAAAGTGAAGTCCTTCTATTTTTCTCTGCAGCTATGCAGCACGTCCTGGACACCCTGAGCGACTCGGCCAACTCCACTTCAGCCAATGCCCTGGACCTCATCTTCCTCAAGGGCATCATGGAGAGCCCCATAACGCACGATTCCGTGGCCTCCAAGAGCTACGAGAcacccccccccagcccctgtGCCTTTCTGGACGCGGCTCTCAACAACCAGCCAGTCCCCCCCGACGCCGTCAGGATGGTGGGCATCCGGAAAGTCTCTGGAGAGCACCTGGGCGTGACATTCCGCGTGGAGAGCGGGGAGCTGGTGATCGCACGCATCCTGCACGGGGGCATGATCGACCAGCAGGGCCTTCTGCACGTGGGTGACATCATCAAAGAGGTCAACGGCAAGGAGGTGGGCAATGACCCCAAGGTGCTGCAGGAGATGCTCAAGGAGGCCAGTGGCAGCGTGGTCCTCAAGATCCTGCCCAGCTACCAGGAGCCACACCCCCCGCGCCAGTGTCACTTCGACTATGACCCTGCCCACGACAACCTGATCCCCTGCAAGGAGGCGGGGCTGAAGTTCAGCAGCGGCGACATCCTGCAGATCGTCAACCAGGAGGACCTCAACTGGTGGCAGGCCTGTCATGTGGAAGGGGGCAGTGCCGGCCTGATCCCTAGCCAGCTGctggaggagaagaggaaggcCTTTGTCAAGAGGGACCTGGAACTGGCTGCAGTGGGTGCGCTGTGCGGGGGCATCAGcggcaagaagaagaagaagatgatgtACCTGACAACGAAGAATGCAGAGTTTGATCGCCACGAGTTGCTCATTTACGAGGAGGTGGCTAAGATGCCACCCTTCAGGAGGAAGACGCTGGTTTTGATCGGGGCGCAGGGAGTGGGCCGGCGCAGCCTGAAGAACAAACTCATGCTTTCTGACCCAACCCGATACAGTACTACCATCCCCTACACATCCCGGAAGCCCAAGGAGGATGAGAAGGACGGGCAGATGTACCTGTTCGTGTCGCGTTCTGAGATGGAGCAGGACATCAAGAACGGGCGCTACCTGGAGCACGGAGAATACGACGGCAACCTGTATGGCACCAAGATCAACTCCATCCACGAGGTGGTGGAGGCTGGCAAGATCTGCATCCTGGATGTCAACCCCCAGGCGCTGAAGGTACTGCGGACATCTGAGTTCCTGCCCTACGTGGTTTTCATCGAGGCGCCCGACTTGGAGGTTCTCCGGGCCATGAACAAGTCAGCCATCGAGGCTGGAGTGGTGACCAAGCAGCTAACGGAGGCGGAGCTGAAGAGAACCCTGGACGAGAGCGGACGGATCCAGCGCGCCTACAGCCACTACTTCGACCTCACCATTGTCAACGACAACCTGGAGGGGGCCTTCCGTGGCCTGCGGGCAGCGCTGGAGAGACTGAGCGCTGAGCCCCAGTGGGTTCCCGTCAGTTGGGTCTTCTAA

Function

NR:

description
PREDICTED: MAGUK p55 subfamily member 2-like isoform X2

GO: NA

KEGG:

id description
K24048 MPP2_6; MAGUK p55 subfamily member 2/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016693 True 1488 mRNA 0.59 10 27655748 27669412

Neighbor

gene id symbol gene type direction distance location
AMCG00016692 NA coding downstream 4899 27643639 ~ 27650849 (-)
AMCG00016688 nr1d1,LOC102302421 coding downstream 138775 27509645 ~ 27516973 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding downstream 221888 27430102 ~ 27433860 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 274660 27375965 ~ 27381088 (-)
AMCG00016670 LOC106579309 coding downstream 280048 27370979 ~ 27375700 (-)
AMCG00016694 LOC105013104 coding upstream 31600 27701012 ~ 27707529 (-)
AMCG00016695 NA coding upstream 62903 27732315 ~ 27738429 (-)
AMCG00016700 NA coding upstream 136937 27806349 ~ 27809112 (-)
AMCG00016701 tmem101 coding upstream 170783 27840195 ~ 27842668 (-)
AMCG00016709 NA coding upstream 322235 27991647 ~ 27997674 (-)
G15095 NA non-coding downstream 102586 27550312 ~ 27553162 (-)
G15079 NA non-coding downstream 113908 27535325 ~ 27541840 (-)
G15075 NA non-coding downstream 230927 27424554 ~ 27424821 (-)
G15074 NA non-coding downstream 239209 27416249 ~ 27416539 (-)
G15073 NA non-coding downstream 239856 27415653 ~ 27415892 (-)
G15165 NA non-coding upstream 125180 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 127371 27796783 ~ 27797008 (-)
G15172 NA non-coding upstream 132717 27802129 ~ 27805042 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding upstream 141226 27810638 ~ 27815464 (-)
G15200 NA non-coding upstream 214227 27883639 ~ 27884430 (-)
G15076 NA other downstream 227097 27424893 ~ 27428651 (-)
G15067 NA other downstream 251826 27401676 ~ 27403922 (-)
G15026 NA other downstream 285609 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 376414 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 652041 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 460600 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1112060 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1532460 29201872 ~ 29225587 (-)
G15706 NA other upstream 2532047 30201459 ~ 30202351 (-)
G15787 NA other upstream 2856880 30526292 ~ 30529500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04562461_04568806 MPP2A coding CI01000069 null 4562461 ~ 4568896 (+)