AMCG00016694 (LOC105013104)


Basic Information

Item Value
gene id AMCG00016694
gene name LOC105013104
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27701012 ~ 27707529 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016694
AAGAGCCCGGCGTTTgaggaaagagaaggagagcaGAGTCCAAGACATCAGAGCAGCGTCGTCTTTTTCAACAGAAGGATTCTGCCTGAAGAACCCAGTCGCCTCTTTTCCTTCCTACCACCTGTAGCGCAAAACATCTCCTTAAAAATGGTGGCCATTCTGAAGCCCTGGAGCGCGGTGCTGGCGCTGGTGCTCTGCGTGCTGGTGTGTCTGGGCACCTTCGTGGATGCCTACCCGCCCAAGCCCGAGAACCCCGGCGAGGACGCCCCGCCAGAGGAGCTGGCCAGATATTACTCTGCGCTGAGGCACTACATCAACCTGATTACGAGACAGAGGTATGGCAAGCGCTCCAGCCCCGAGGCCCTAGTGTCAGACCTGCTGTTTGGTGACAACTCAGACCACAACCAGAGATCACGATACGAGGACTCCTACATGTGGTGATTCCTACctccctttcctctctctctccccatctctcttctctctctctctatcggCCAAGCTGAGGAATCCACCCACCGCCATGGACGGCAACCAACTTGActagaacacaaaaacaacaactctgtcCACTCCCCGGCCCGCTATTCTACAACTGCAAacctctcccttcctcctctgctcctctctgtcccctccctctctctctctctccatccttgCTTCTTACAACACAAACactattgtatataatttattactGAATAAcgagatagaaaaaaaaaacgacaaaaaaatcataaataaatgaaagaaaatcttCAGTCGAATGCACTATATCATAAAGAGAAAATCCTTTattgtttgtaatgtataaATGCTTATGTGCGATTAAAAGTTTAATGGATGATTCAGATGTGATG

Function

NR:

description
PREDICTED: peptide YY

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05232 NPY; neuropeptide Y

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016694 True 863 mRNA 0.49 4 27701012 27707529

Neighbor

gene id symbol gene type direction distance location
AMCG00016693 LOC107388104 coding downstream 31600 27655748 ~ 27669412 (-)
AMCG00016692 NA coding downstream 50163 27643639 ~ 27650849 (-)
AMCG00016688 nr1d1,LOC102302421 coding downstream 184039 27509645 ~ 27516973 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding downstream 267152 27430102 ~ 27433860 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 319924 27375965 ~ 27381088 (-)
AMCG00016695 NA coding upstream 24786 27732315 ~ 27738429 (-)
AMCG00016700 NA coding upstream 98820 27806349 ~ 27809112 (-)
AMCG00016701 tmem101 coding upstream 132666 27840195 ~ 27842668 (-)
AMCG00016709 NA coding upstream 284118 27991647 ~ 27997674 (-)
AMCG00016713 NA coding upstream 384715 28092244 ~ 28107936 (-)
G15095 NA non-coding downstream 147850 27550312 ~ 27553162 (-)
G15079 NA non-coding downstream 159172 27535325 ~ 27541840 (-)
G15075 NA non-coding downstream 276191 27424554 ~ 27424821 (-)
G15074 NA non-coding downstream 284473 27416249 ~ 27416539 (-)
G15073 NA non-coding downstream 285120 27415653 ~ 27415892 (-)
G15165 NA non-coding upstream 87063 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 89254 27796783 ~ 27797008 (-)
G15172 NA non-coding upstream 94600 27802129 ~ 27805042 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding upstream 103109 27810638 ~ 27815464 (-)
G15200 NA non-coding upstream 176110 27883639 ~ 27884430 (-)
G15076 NA other downstream 272361 27424893 ~ 27428651 (-)
G15067 NA other downstream 297090 27401676 ~ 27403922 (-)
G15026 NA other downstream 330873 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 421678 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 697305 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 422483 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1073943 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1494343 29201872 ~ 29225587 (-)
G15706 NA other upstream 2493930 30201459 ~ 30202351 (-)
G15787 NA other upstream 2818763 30526292 ~ 30529500 (-)

Expression


Co-expression Network