AMCG00016697


Basic Information

Item Value
gene id AMCG00016697
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27822673 ~ 27823994 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016697
ATGCTGGCCACTGCTGTCCTGCTCTTCCTCGCCGGGGGTCTGACGGAGGCCTCAAAGCTCTGTCCTCCCCACTGTCTGTGCTATGACTCCTCGGGCCTGGTGGACTGCCGCGCCCGCGGGTTCAGCCATGTGCCCCGGAACATGCCCCACGCGACCTGGCTGCTCAACCTCGGGGACAACCACCTGTCTGAGCTGCGGAGCCACTCCTTCAGCGGCCTGTGGTCTCTGAGGATTCTAGTGCTGTCAGGCAGTGGCATAGAAGTGCTGCAGCCCCAgGTGTTCTCCTCTCTCGCCTTCTTGGAGAAGCTGGATCTGAGTCGCAACGAGCTGCGCTGGCTGCCCCCTGACTTCTCCCACAGCCTGTCCTCCCTGCGAGAGCTGCTGCTGGACCACAACAGCCTGGAGGCCCTGCAATTCCTGAGCCTGGAGGGGCTGGAGAACCTGGAGAAGCTGGACCTGAGTTACAACCGCATCCAGGCCGTGGCACCGGGGACCTTCAGAGGTCTGTCCCGTTTACGCCACCTCTACCTGCAGGGTAACCAGCTGAGTGTGCTGCGGCAGGGCACTCTGGCCATGCTGCAGAGCCTGGAGGTGCTGCTGCTGAGTCAGAATAACATCTCCAAGATCGAGACGGAGGCCTTCACCTCGCTGCACAGCCTCTCCCTGCTGGGCCTGGAGGGCAACCAGCTGGAGCACCTCAAATTCAAGACCTTCCTGAACTTGCACACCCCCAGCACTCACCTCCAACTGGCCGGCAACCCCTGGGACTGCGACTGCGACCTGCACCGCGTCTTCAGCAAGATCCTGAGCGTGCGCCACCTCCACGTGGATGACTACAAGAACATCAGTTGCCATGGGCCCTTGCAGTTGGCTGGCGCTTCCCTGGCCTGGGTGGACAGCCAGCTCTGCGTGGCAGAGACCGCCACCGTGCTGGTCATCACTGTCACCGTGCTGGTCACCGTCATCGCAGCCATCGTCATGGCTGAGAGGAACCGCAAGAAGAACCGTGGGAAGAACTGGACCGAGGCCGAGGGCTCAGACCCGCAGGACAAATGA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016697 True 1056 mRNA 0.62 2 27822673 27823994

Neighbor

gene id symbol gene type direction distance location
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 5480 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 57860 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 211901 27607216 ~ 27610772 (+)
AMCG00016687 rapgefl1 coding upstream 237692 27576533 ~ 27584981 (+)
AMCG00016685 NA coding upstream 283950 27528826 ~ 27538723 (+)
AMCG00016703 NA coding downstream 38195 27862189 ~ 27871186 (+)
AMCG00016704 NA coding downstream 57446 27881440 ~ 27888212 (+)
AMCG00016710 NA coding downstream 182290 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 216030 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 249601 28073595 ~ 28090180 (+)
G15025 NA non-coding upstream 452535 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 540104 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 548376 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1106872 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1109544 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 292924 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 294549 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 336671 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 401848 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 610990 28434984 ~ 28435256 (+)
AMCG00016699 LOC106607176 other upstream 23547 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 196583 27613105 ~ 27626090 (+)
AMCG00016691 NA other upstream 217794 27588479 ~ 27604879 (+)
AMCG00016683 NA other upstream 269553 27542486 ~ 27553120 (+)
AMCG00016663 NA other upstream 828725 26966297 ~ 26993948 (+)
AMCG00016705 NA other downstream 5274 27829268 ~ 27833537 (+)
AMCG00016706 LOC102299446 other downstream 12519 27836513 ~ 27839103 (+)
AMCG00016702 NA other downstream 48669 27872663 ~ 27878697 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 140584 27964578 ~ 27998777 (+)
G15223 NA other downstream 280743 28104737 ~ 28105711 (+)

Expression


Co-expression Network