AMCG00016698 (lsm12,LOC107708984,LOC107562026,LOC107693683)


Basic Information

Item Value
gene id AMCG00016698
gene name lsm12,LOC107708984,LOC107562026,LOC107693683
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27810648 ~ 27817193 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016698
CTGGCGGAGAAGATGGCGGCTCCTGGACCGGGGGAGTACTTCAGTGTCGGCAGCCAGGTCTCCTGCCTCACTTGCTTGGGACAGCGTCTGCAAGGGGAGGTCGTCGCCTTCGACTACCAGTCCAAGATGCTGACTTTGAAATGCACCTCCTCCAGCGGCAAGCCTAACCTCAGCGACGTCATCCTGATTAATTTAGCCTACgtttcagaagtggatataataAACGACCGCACTGAGACGCCTCCTCCTCTAGCATCGCTGAATGTTAATAAGCTTGCCAACCGAGCACGGACAGAAAAGGAGGACAAGCTGTCCCAAGCATATGCAATAAGTGCTGGAGTGTCAGTGGAGGGACAGCAGCTCTTTCAGACCATACACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATAATTGTAATGGACGACGTCGTTATCGCCCCACCTTACCAGGTTGAGAACTGCAAAGGCAAAGAGGGCAGCGCTTTGAGTCACGTACGCAAAATAGTTGAGAAACATTTTAGAGATGTGGAAAGTCAGAGGTTGATGCTGCATTCACAAGCACAACAAACACAGAAGGACTCCACCTTATCATCCTGAGCCCGCGACTCCTCCAGAAGGCCATGCGTTTCCACTGCCAGGCGAGGCACGATTTCTCCCTCCCATCTGTCTGAGGCAGTGCGGGGGGCTAGATCCATTCATGTCTGGGAGactgaaaccatttaaaaaaacaaaacaaaaaaaaagaaaaagcgagagagaaaaagagaaaaaaaaaaaatgaaattagacttttaaaaaaaaaataa

Function

symbol description
lsm12 Orthologous to human LSM12 (LSM12 homolog).

NR:

description
protein LSM12 homolog A isoform X2

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016698 True 812 mRNA 0.48 5 27810648 27817193

Neighbor

gene id symbol gene type direction distance location
AMCG00016696 NA coding upstream 45835 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 199876 27607216 ~ 27610772 (+)
AMCG00016687 rapgefl1 coding upstream 225667 27576533 ~ 27584981 (+)
AMCG00016685 NA coding upstream 271925 27528826 ~ 27538723 (+)
AMCG00016684 NA coding upstream 302412 27505189 ~ 27508236 (+)
AMCG00016697 NA coding downstream 5480 27822673 ~ 27823994 (+)
AMCG00016703 NA coding downstream 44996 27862189 ~ 27871186 (+)
AMCG00016704 NA coding downstream 64247 27881440 ~ 27888212 (+)
AMCG00016710 NA coding downstream 189091 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 222831 28040024 ~ 28051031 (+)
G15025 NA non-coding upstream 440510 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 528079 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 536351 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1094847 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1097519 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 299725 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 301350 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 343472 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 408649 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 617791 28434984 ~ 28435256 (+)
AMCG00016699 LOC106607176 other upstream 11522 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 184558 27613105 ~ 27626090 (+)
AMCG00016691 NA other upstream 205769 27588479 ~ 27604879 (+)
AMCG00016683 NA other upstream 257528 27542486 ~ 27553120 (+)
AMCG00016663 NA other upstream 816700 26966297 ~ 26993948 (+)
AMCG00016705 NA other downstream 12075 27829268 ~ 27833537 (+)
AMCG00016706 LOC102299446 other downstream 19320 27836513 ~ 27839103 (+)
AMCG00016702 NA other downstream 55470 27872663 ~ 27878697 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 147385 27964578 ~ 27998777 (+)
G15223 NA other downstream 287544 28104737 ~ 28105711 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005084 lsm12b coding NC_007123.7 CM002896.2 3287783 ~ 3299149 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_04596548_04605172 LSM12A, LSM12, LSM12B coding CI01000047 null 4595980 ~ 4605172 (-)