AMCG00016702


Basic Information

Item Value
gene id AMCG00016702
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27872663 ~ 27878697 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016702
GGCAACATGGCTCGTGACCTGACAGATAAGGAGTTGGTCAAAATGGAACTGGAGCAGCTGCAGAAGGAGGTGAAAACCGAGAGGATGCTGGTGTCCAAAACAGCCAAGGAGCTGGTAGAATATATGGAGTCCCAGGCTGCTGAGGACCCCCTCCTCAAAGGTGTTCCAGAAGACAAGAATCCCTACAAGGAGAAGGGGGGCTGCACAATAACCTAG
>TU18876
CGGTAGGCCTAATTCCCAGGATGGATACTATGGCTAATCCCAGAGTAGCCGGGTTCAAACTGTAATCCGCTGGATAAAATTGGCCAAAACCCCGAAATGGGATTACAAGATGACGCAAGAAGCAGAAGGAGATTGTTTTGGGCTAATCTGATTTGTGGATTGATGAAATCAGGACCCCCAGCCCGCCCCACCTGCCATCTGGAGAAGTCCATGAAGTAGAGAGGGAACAACGCTGTCCAGTCAGACCCAGGAGCAGCAGCCGACTCGCTCACATGGTTCTATAGAAGGGACGCCGCCTCAATCCCTAGTCCTGAGCCCCCTGTACTCTAGGGCAACATGGCTCGTGACCTGACAGATAAGGAGTTGGTCAAAATGGAACTGGAGCAGCTGCAGAAGGAGGTGAAAACCGAGAGGATGCTGGTGTCCAAAACAGCCAAGGAGCTGGTAGAATATATGGAGTCCCAGGCTGCTGAGGACCCCCTCCTCAAAGGTGTTCCAGAAGACAAGAATCCCTACAAGGAGAAGGGGGGCTGCACAATAACCTAGCCCAGGGGGGAGCCTTGGggatacacaaaacacacacacacaggaactgGCTCTGTTTCATGGTTTCTATCAGAGatgtacaaataaaagtaaaattaatacaGTGTAAAAATATTAAGCAAAGCTGTTGCTTAAGTTAGAAGTGATGCATATCATAGGAGCTGTAAACGAGGAAAGCAACGCCTCACTGGAGCCTGAGGAGGATCACACCGGACGAGCTCGACACAGATTACCACACGTCTGCCTCTGAAATCAACCCCCTCTCCCCCGCCTCGGACCCTGGAGGTTTGACCCCCTGAGTTTCACATCATACTGCGTTCAGCGTATAAACATAAAACCAAATTTCCATCAGCTCCCCCCTCCCTATCTCCCCACACACCGTCTCCACAGCAAGGCTCCCAAAGTCAAAAGCTGTGAGGGTCATAATCAAGGTGCTTCCCTCTGACCCCCCCTTCTCCATTTCCCCAGCCCCCTCGCCCTCCACATCCCCTTGAGAACGAGAGCCGTGCGATAGCTCTGGGGCGGAGTGGCGCTGTCTGTGAGAGCTATTTGTTTCCAGTGTGTATCATTTGCATTTGCTGAagatttgtgtaaataaaacaaacattatctAGCTATGCAAATTTATGCTGTCTTTTCTATTCTGATGCTGGTTCTGGGTTCTGAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016702 False 216 mRNA 0.52 2 27877448 27878030
TU18876 True 1213 TUCP 0.43 4 27872663 27878697

Neighbor

gene id symbol gene type direction distance location
AMCG00016703 NA coding upstream 1477 27862189 ~ 27871186 (+)
AMCG00016697 NA coding upstream 48669 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 55470 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 107850 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 261891 27607216 ~ 27610772 (+)
AMCG00016704 NA coding downstream 2743 27881440 ~ 27888212 (+)
AMCG00016710 NA coding downstream 127587 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 161327 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 194898 28073595 ~ 28090180 (+)
AMCG00016720 NA coding downstream 276065 28154762 ~ 28181038 (+)
G15025 NA non-coding upstream 502525 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 590094 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 598366 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1156862 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1159534 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 238221 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 239846 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 281968 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 347145 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 556287 28434984 ~ 28435256 (+)
AMCG00016706 LOC102299446 other upstream 33560 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 39126 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 73537 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 246573 27613105 ~ 27626090 (+)
AMCG00016691 NA other upstream 267784 27588479 ~ 27604879 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 85881 27964578 ~ 27998777 (+)
G15223 NA other downstream 226040 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 864663 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1355807 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 2143910 30022607 ~ 30107727 (+)

Expression


Co-expression Network