AMCG00016703


Basic Information

Item Value
gene id AMCG00016703
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27862189 ~ 27871186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016703
TCACATTACAAGTTGAAACTGAGCTACCTCGCCATCCTGTTATGTGGCATGGGCTCAGTTTATTACATCTATAACAGGGCCAGTGGCTTTCCTGAGCCAGAGGAGTATGATGATGACTCAGGGCTGTTCAATAAGCTAAATATATCTAACCAAGCTACCAGAAGCATGCAGTGCAGCTGCTTGAAGACATCGGAACTGTACAACCTGGAAGACTTTGTGGATGCGACAGAGCTGAGTGAAGTCAGACAAAGGAGGGAGGTGGAGTACCAAAAGCACCTGACCAGgGAACAGTCTCCTTTACAGCAACTCCTAGTTGCTCAGCCCAACTCCCCTCTGATGTACCCGATCCAAGGAGTTCACGCTGCTCCATTGCAGGAAACCTTTATACCAGGGCTAGGTGTACATGCACGTAATAGAGATCATTACCAGGTTACTCTTAGTGTCACCAACGGAGTCCTTGCCATTAAGAACTTAGACTCTGATGGCAAAgtagaggggcagagagagaaggTCCTGTCTTTGTCTGCCTCCAGGCTGGACACTCTCAATGGCCTGCTGAAGTCACTCACCTACACAAGCAGCCTGTACAGGATCAAGGGAGGTGATCTGGTTCATGTCACATTTGAGCAGTATTCTGCTACCTTCCCTATTGTGATACAACAGACGCCCATCCCAAACCTGTCTGACCCTGGCCAAGACATCAACTCGCAGGTGACGATCACCACCAAGACTTTCCTGAGATACGCACAGCTTGATCGCCTCATTGAGAGTATTCGAGCATTTTACAAGGATATCAAAATCATTGTTGCAGACGACAGCTTCAAACCACAGCCGATCAAAGGCTCGAACATTGAGCAATACATCATGCCCCCCGCTAAGGGCTGGTTTGCAGGCAGGAACCTGGTCGTGTCTCAGGTCTCCACCAAATACCTGCTGTGGGTGGatgatgacttcctgttcaCCGAGAGCACCAAGATCGAGAAGCTGGTGGAAGTTATGGAAGCCATGCCTGAGCTGGATGTGGTGGGGGGCTCAGTGGAAGGCAATTTCTTCAATTTCAAGCTGGTGTATGAAGAGGGGGAGGACGGTGGCTGTCTGAGCCGGAGAATGGGCAACTACCAGAGCATTCCTGGCATCCCAGATTGCCACCTCACCGGGGGAGTGGTCAACTTCTTCCTCGCCCGGACAGACTCGGTCCGCAGGGTGGGCTTTGACCCCCGGCTCCAGAGAGTAGCTCACACAGAGTTCTTCGTGGACGGTCTGGGGAAACTACTCGTGGCTTCCTGCAGCACAGTCTCTGTGGGACACCAGCCTAAAGGACAGGCAACTGGAGAGGAGAAAAAGGTGCTGGACCAGTACTGGACATTTCGAATTGAAAAGCAGGAGGAAGTCAAAATGAAGATGGCACTATACTACTTTAAGAACAGACTGAAGTGTTTTTCACCatagaataagaaaacaaaaatgattctGTATGATAGAAGAGATTGCTAATCCCGCCCCCACCAGTTTATGGGTTGTTCAGTACATATAAgtgttcttttttccctttgtttaaaataatcatatagtTTTCTTGTGCACTTAATATGGTTATATTATTCAAGGGACAAAAGGGAATGTAATGGAATCCTGTTGATGCCTTATTTTGATATGACAAGAATATCGCATGATATacacaatatgtattgttttgtattgttgcCAGTTTTACACTTTAGACCAGTGGTGGAGAGCCAGAAGACTGAACACATCGTATAAGTTGCACACTGTTCCAAAGCTGTCATCTATATGAAAAACGCCTTGccccagaaaaaaataaaaacaaattgtcatATACACAGAGTGAAGCTCAGGTATATTTCTGGTGCAAACTGAATTGTGCTGGTGACCGAGATGGTGTCAAACAGGTTGGACAATTTTTGTGAGACGAGCTGCTCACACTGGTAGATCAAACCACTTTGCTGCTATGGAAGTAGGatctaaaacttttttttttttttt

Function

GO: NA

KEGG:

id description
K09655 B4GALNT2; beta-1,4-N-acetylgalactosaminyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016703 True 2004 mRNA 0.46 10 27862189 27871186

Neighbor

gene id symbol gene type direction distance location
AMCG00016697 NA coding upstream 38195 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 44996 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 97376 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 251417 27607216 ~ 27610772 (+)
AMCG00016687 rapgefl1 coding upstream 277208 27576533 ~ 27584981 (+)
AMCG00016704 NA coding downstream 10254 27881440 ~ 27888212 (+)
AMCG00016710 NA coding downstream 135098 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 168838 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 202409 28073595 ~ 28090180 (+)
AMCG00016720 NA coding downstream 283576 28154762 ~ 28181038 (+)
G15025 NA non-coding upstream 492051 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 579620 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 587892 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1146388 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1149060 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 245732 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 247357 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 289479 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 354656 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 563798 28434984 ~ 28435256 (+)
AMCG00016706 LOC102299446 other upstream 23086 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 28652 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 63063 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 236099 27613105 ~ 27626090 (+)
AMCG00016691 NA other upstream 257310 27588479 ~ 27604879 (+)
AMCG00016702 NA other downstream 1477 27872663 ~ 27878697 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 93392 27964578 ~ 27998777 (+)
G15223 NA other downstream 233551 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 872174 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1363318 29234504 ~ 29256824 (+)

Expression


Co-expression Network