AMCG00016704


Basic Information

Item Value
gene id AMCG00016704
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27881440 ~ 27888212 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016704
tccctcAGACTCCTGGAACGTCTCCCTGGCTCCACCGATAGCCAAGTTCTCTGTGCTCTGCTGGAAGATGTGGCTCGTGCTGCTTCTGGGGGCTGGAGGcctggtcctggtcctgggCTTCACTGTTTACTACTGCATGATCGGCAGCAAAGTCAGCCCGTTCTCCCTGGACTCGGTGCGTCCGCCTGGGCCGCTGGTGACGGaccagaggcagagagacagagtgctGAAGCAAGGATTCAGCATGGATCGGGTGCCATCAAACCTGAATGCCATTGTGATTGGCAGTGGAATTGGTGGGCTGACTGCAGCGGCGGTTTTGGCCAAGACTGGTAAACGGGTGCTGGTGCTGGAGCAACATGATCAGGCTGGGGGCTGTTGCCACTCCTATGCAGAGAAAGGCTTCGAGTTTGATGTCGGGCTGCACTACCTGGGCCAGCTCCACGAGAACAGCCTGCTGCGCATCGCTGTGGACCAGATCACCGAGGGGCAGCTGCAGTTCGCACAGCTGGAGCAGCACTTTGACACCATCGTCATTGGGGACAAGCAGAACAGCCGCCACTACCACATCCACAGTGGCAAGACCGAGATGGCGGAGAACCTGAAGCGACAGTTCCCCGAGGACACTGAGGCCATTGACAAGTTCATGACGCTAATGAAGGTAGCAGCTCGAAAGACACACTACCTGGCCATGTTGAAGTTGATTCCCCTCTGGCTGGCTCTGTTCCTCATCAAGTCACGCCTCGTTCACTGCTTCTCCTCCATCTTTCGACTGTCCGGCTCCAGCCACACAGAGAAGGCAGGGGGTGCTGTGCTAGTCAGAGCTCCCGTCCAGCGCATCCTAGTGAACCAGCAGGGCACAGCATACGGTGTGACCGTGAAGAAGGGTCAGGAAGAGGTCAGCATCCTGGCCCCAGTGGTCATCTCCAACACTGGGATCCTGGTTCGCCAGGGCATGGGCTCCTTCCTGGTGTTTGTGGGTCTGGATGGGACTCAGGAGGAACTTGGCATCGTCTCCACCAACTTCTGGCTgtttaagaacaacaacatgGATGAATCGATGGATCGCTTCTTCTCTCTGGACCGGGAAGAGGTGGCGGCCAACGTCCCCATGATGTTCATTACCTTCCCCTCAGCTAAAGACCCCACCTCCAGCATCAGACACCCAGGGAAGTCATGCATGACTCTGCTGACTATGGTTCGCTATGAGTGGTTTGAGGAGTGGAAGGACACCACTGTGAAAAAGAGAGGGCCTGACTATGAGAACCTCAAGATGGGCATCGCCAACGCACTCCTGGACTGGGCCTGCGAGATCCATCCCCAGATCAGGGAGAAGgtggTGTTCATGGAAGCTGCCACCCCTCTCTCCAACATGCACTACCTGGGCGCACCGCGGGGAGAGATGTATGGGGCTGAGCACAACCTGGCCAGGTTCTTCCCTGAGACGGTGGCCAGGATCCGGGCAGAGACGCCAGTCAAGAACCTGTACATCTCAGGCCAGGATGTGTTCTGTAATGGTGTGGCGGGGGCTCTGCATGGGGGGCTGCTCTGTGCCGCGGCTGTGCTCGACCACATCATCTACATCGACCTGCTCCTGCTCAAGAAGAGACTCAAGAGGGAGAAGGCAAGAAAGCAAGCCTGAGCCCACAGCTCCATCTGCTGGACAGAGACAACATTACCGTTCTCCAGAAAAAATGATAAACACAATAGAACAGTGGCTACCGTCACACAATGTGGTTGGGAAGGTTAAAATGCAGACCTacgcagaaatatatatttgttttattaaaatatatagataaaactgtggtggaaaataaaatgaaagcaaatactCTGTGAATGTGGCCATGGACAGGGCTGCTCTGTCCTGCCTGTGATCtggaaggagacagagagaaaataatggaTCATAAGTTACCCCATTAGGAGCACAATGTTGCACTTAAGCAGCACATAACAACTCATGTTTAaacctatatatacatatttaaacacaaacacattttcacaaagtCAACACACTGGCCAAACCACTGAATGCTACTaagataaacatttatattttttatttgtctctttaaatacacacacaattcacacaTACTCACAGTTTGTAGGAATGCatataatgtttcttttgtttactTGCCAGTCATTGTTTGTACATTGTTGTCTTCATTGTTCACTTCGTAGAGCAGAGGGACTTCAGTGATCTGAGCCAAAGTGTGGCCCCTGTGCCACAAGAAACAAAGGTGTTCAGTTCTGGTGTGTTTTGAGACATTGCATATAGTATTGGCCCAAGATGGAGTGGGCTCATTCAGGTTAATCCTACTGTATGAAATCATTGAAAAGGAAACTACTGTCATCCCTGTGTTAAAGTAGtcataacaaattaatattgatGAGAAGCCATTGAAGAGACTGAAGGATTGATGGCCTGTAGTCACTCAGCCAGGTCCATTCTTGCTTCTCCAGTTCATGTTGCAAGACATATATTACTAATTGCTCCATTACTTAACACAGTTCATGCATgagatttaaaacacaaatattgatTCATCATGCTAGAAATGtatacacttaaaataaaataaatccatctaTCTACTTATATATTTTGCTGTTCACCTATGTGTTTAGGGTGCCTCTCTGCATGGTTTAACCACA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016704 True 2670 mRNA 0.50 11 27881440 27888212

Neighbor

gene id symbol gene type direction distance location
AMCG00016703 NA coding upstream 10254 27862189 ~ 27871186 (+)
AMCG00016697 NA coding upstream 57446 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 64247 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 116627 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 270668 27607216 ~ 27610772 (+)
AMCG00016710 NA coding downstream 118072 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 151812 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 185383 28073595 ~ 28090180 (+)
AMCG00016720 NA coding downstream 266550 28154762 ~ 28181038 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding downstream 392286 28280498 ~ 28286427 (+)
G15025 NA non-coding upstream 511302 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 598871 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 607143 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1165639 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1168311 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 228706 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 230331 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 272453 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 337630 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 546772 28434984 ~ 28435256 (+)
AMCG00016702 NA other upstream 2743 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 42337 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 47903 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 82314 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 255350 27613105 ~ 27626090 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 76366 27964578 ~ 27998777 (+)
G15223 NA other downstream 216525 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 855148 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1346292 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 2134395 30022607 ~ 30107727 (+)

Expression


Co-expression Network