AMCG00016705


Basic Information

Item Value
gene id AMCG00016705
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27829268 ~ 27833537 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016705
ATGGCCAAACTCCACGCCGgctccagcagctgcagggccGTGGCTCTGGCCGGCCACCTGCTCTCGAAACCCGCCACCCCGGCGCACAAACACCACAACCGGCACCTCCGTAAACTCCAGCGGCACACGGGCTCTGTGAGCGCAGGGGGCTTCGGGAGCAACAGCCCGGCTTTGGCCCAACTAGACTACCCCAGAGCCACGCCGCTGCCAGAGCTCCCCGCTCCAGCCAGCCGGAGCCTGATCTACCGCGACGTCAAGGCGTTTCTCAGCGAGATCGGAGGAGACCCCAGGGAGGCTCGGTACTGGCTGACCCACTTCCAGAAGTCCAGCTTGACCCAGTCCCCTGCCTTCGCGGTCCTGGAGGTGGACGAGTCTGTGTTGAAGAACCGGGAGATGGTGCACAGCCTGGCCTTCGGGCTCTCGTTCCTGCAGCGCATGGACATGAAGCCCGTGGTGGTTGTGGCTCTCCAGTCCTCGGGGGAGGAGTGCTACACGCCAACCGCCAGCTGCTCCGGCCAGGGGGCGGCATTGGTGCGGCACTGCCAGGTCCTCACCGAGGCGCTGCTGGGGAGCTCTGCCAGCGTCGTGCCCTTCTTCAGTGCCGAGTCGCTGCTGCTCGCCCATGATGCGCCGACCAGCTCCTCGCACAGGCTATGGAGTCAGTTGTGTAAACGAGGGCCCCTGGGGGCCAGTGTGTAA
>TU18835
TGTGGGTGTCGGTGCCGCTGAGCTTTCTGACCGGCTCTACTAATCGCAGCTCACTGTGTCCACGACGCCCCCGGCTGCTGGCTTTCAGTGCGGGTAGATGGCCAAACTCCACGCCGgctccagcagctgcagggccGTGGCTCTGGCCGGCCACCTGCTCTCGAAACCCGCCACCCCGGCGCACAAACACCACAACCGGCACCTCCGTAAACTCCAGCGGCACACGGGCTCTGTGAGCGCAGGGGGCTTCGGGAGCAACAGCCCGGCTTTGGCCCAACTAGACTACCCCAGAGCCACGCCGCTGCCAGAGCTCCCCGCTCCAGCCAGCCGGAGCCTGATCTACCGCGACGTCAAGGCGTTTCTCAGCGAGATCGGAGGAGACCCCAGGGAGGCTCGGTACTGGCTGACCCACTTCCAGAAGTCCAGCTTGACCCAGTCCCCTGCCTTCGCGGTCCTGGAGGTGGACGAGTCTGTGTTGAAGAACCGGGAGATGGTGCACAGCCTGGCCTTCGGGCTCTCGTTCCTGCAGCGCATGGACATGAAGCCCGTGGTGGTTGTGGCTCTCCAGTCCTCGGGGGAGGAGTGCTACACGCCAACCGCCAGCTGCTCCGGCCAGGGGGCGGCATTGGTGCGGCACTGCCAGGTCCTCACCGAGGCGCTGCTGGGGAGCTCTGCCAGCGTCGTGCCCTTCTTCAGTGCCGAGTCGCTGCTGCTCGCCCATGATGCGCCGACCAGCTCCTCGCACAGGCTAGTGTTTCATGAACGATGGGaggattttatgtttttttctttattggttTGTGTGAATGCTTTCAGTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016705 False 699 mRNA 0.66 3 27829365 27833537
TU18835 True 821 TUCP 0.55 2 27829268 27831694

Neighbor

gene id symbol gene type direction distance location
AMCG00016697 NA coding upstream 5274 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 12075 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 64455 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 218496 27607216 ~ 27610772 (+)
AMCG00016687 rapgefl1 coding upstream 244287 27576533 ~ 27584981 (+)
AMCG00016703 NA coding downstream 28652 27862189 ~ 27871186 (+)
AMCG00016704 NA coding downstream 47903 27881440 ~ 27888212 (+)
AMCG00016710 NA coding downstream 172747 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 206487 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 240058 28073595 ~ 28090180 (+)
G15025 NA non-coding upstream 459130 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 546699 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 554971 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1113467 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1116139 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 283381 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 285006 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 327128 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 392305 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 601447 28434984 ~ 28435256 (+)
AMCG00016699 LOC106607176 other upstream 30142 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 203178 27613105 ~ 27626090 (+)
AMCG00016691 NA other upstream 224389 27588479 ~ 27604879 (+)
AMCG00016683 NA other upstream 276148 27542486 ~ 27553120 (+)
AMCG00016663 NA other upstream 835320 26966297 ~ 26993948 (+)
AMCG00016706 LOC102299446 other downstream 2976 27836513 ~ 27839103 (+)
AMCG00016702 NA other downstream 39126 27872663 ~ 27878697 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 131041 27964578 ~ 27998777 (+)
G15223 NA other downstream 271200 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 909823 28743360 ~ 28761192 (+)

Expression


Co-expression Network