AMCG00016706 (LOC102299446)


Basic Information

Item Value
gene id AMCG00016706
gene name LOC102299446
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27836513 ~ 27839103 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016706
ATGGCAGAAAGAGCTGCCAGCTTTGGTATTCTTTGGTACAGCAGCCTGGACGAGATTGATGTCGACCGGCTCCTGAACTTGATCAATAAGTCATTTGGGAAGAGTCTGAAAAGCGATTACATCGCCTCGCTGCAGTGCCGGCTGCAGTCTATCTACCTCTCGGAGGGGTACAGAGCGGTGGCCATTGTCACCAAAGAGCCGGTGAGCAGCAGCACACCTTACCTGGACAAACTGGTGGTGAGCAGCAGCCGGCAGGGCCAGGGCACCAGCCAGATCCTGTGGGACTGCATCCGGCAGGACCTGGGCTCCCTGTTCTGGAGGTCCAACAGCACCAACCGCATCAACCCCTGGTACTTTAAAAACTGCGACGGCAGTTTTGTCAATGGCAAGTGGATCGTCTTCTGGTTTGGCCTCTCTGACATTCGGGACTCGTACGAGCTGGTAGAGTTCGCCAAGAACCTTCCAGAGTCTTTCATGGTGACGGAGCCGGGGGGTCCAGCCGAGCCTTCACTGCCCGTGTCCTGA
>TU18859
TTTGTACAGAGTGCATACGCCACTTTCTTACCGGTATGCTGTACCGGTTTGTTCTCGCCTCGGATAGCACTTTACGAATGCGACATCTGCTTCACACCGTTTACACAGGTTCCCTCCTGGCATATCCAGCGTGTTtagacaattatttaattgtatttatcaagAAATAACAGAGGTGGTATGGGGAAATGGCAGAAAGAGCTGCCAGCTTTGGTATTCTTTGGTATTCTTGTCACCTTATCTGTCCCTCTGACCCTCTGACCCTCTGACTCCGGGTCCCCTGTGCAGGTACAGCAGCCTGGACGAGATTGATGTCGACCGGCTCCTGAACTTGATCAATAAGTCATTTGGGAAGAGTCTGAAAAGCGATTACATCGCCTCGCTGCAGTGCCGGCTGCAGTCTATCTACCTCTCGGAGGGGTACAGAGCGGTGGCCATTGTCACCAAAGAGCCGGTGAGCAGCAGCACACCTTACCTGGACAAACTGGTGGTGAGCAGCAGCCGGCAGGGCCAGGGCACCAGCCAGATCCTGTGGGACTGCATCCGGCAGGACCTGGGCTCCCTGTTCTGGAGGTCCAACAGCACCAACCGCATCAACCCCTGGTACTTTAAAAACTGCGACGGCAGTTTTGTCAATGGCAAGTGGATCGTCTTCTGGTTTGGCCTCTCTGACATTCGGGACTCGTACGAGCTGGTAGAGTTCGCCAAGAACCTTCCAGAGTCTTTCATGGTGACGGAGCCGGGGGGTCCAGCCGAGCCTTCACTGCCCGTGTCCTGAGTGCAGCCTGCCAGCACACCGCACACTCAAGACCGCTGGGTGGTGCCACAGTGCAGCGGAGTGCCCTCTCACTGTGCCAGCCTCTTGCCAGCTTCATAAGCACATTACTCTTTAAAGCAAGTCACTCCTATCACAAAGTGTCCCTTGGGGAAATACAATACAAGCAACAATCTTTTTTTGGAAGTACTGTATAAGGAAGTATAAATATTATGGATGTTTATGTTCAAAAGCTCGAGAGTAGACTATTGGGCAGGAGTCGAAACCAAGCATACACAGTGACTTTTGTTATTTAtactggaaataattaaatgtaacctTGGCCTCATTAAAACCCTCTGTGCTGCTGGCAGGTGAATTCCAAGATGTCTGATTTGCCTTCCTGTACCTCCACTGGAAAATGCTTGTGTGGCCTTTATTGTCTAGAACTCATCTGacctaaacaaaatataacccAAGACAAAATGGTGAAGCACAGCTGCGATTTAAGAAACCGGTAGCCGGTAATGTTGGTACACAGGACCAGTTCTGTGGCCTGGATCATATACGGGTGATGTCAGGGAGCCAGACCAGCACAGGTCTTGCACGACCCGATATTGTAGGTGCCAAAAGCTAGTGCTAATATTGGACATTGTTTTAAGACTGTTTAAGGCGCAATCAGAGGGTAGTTTTATTACCAGGCCAGGGCAGTAGTTATTCAAATCTACCTTATCCGCCTGCTATAGATTTTTATACCAGTGTTCTAAGGAAACAGACTCTAAAAGAActgaagcaaatggaaaatCCCACAACTGTTGGGGGATTATATAAAGGTATCTATACTTTTTATCATTGCTTTGTTTACATAATGAAATGCGTTATTGTTCTCATCTTGTCTGATGAGACATGTTGCTTTTAGGAAGGAATTTCTGGTGCAAATGGATTAGTTTCAGTTtgaacttttattaaaaaacaaacaaattaagtgaTGTCATCAGTTTGAGCCAACCAGATTCCTGCAATACAGTTTCCATAGGGATGTGTAATCCTCTCCCTTGTATTGACACCTTTGTCAGTTTATTACCCCCTCTGAGGCCCGACCCCAGGGAGGGTCACCCTGCTCGCCCTACTGAAAAACAGACAAGGACATTACTCACAAAATATGAATCCCTCGTCAAATCTGACGACCAGCCATGTACTAGAGAACCCATTACCACTGTAGTGAttacataagtttaaaaaagtgttataaTACACACTGGGAACAAGGCTGGCTACAAGAGAGCAGGGAAAAACACCAGGCAGGTAGGGGTATGTGATTTTGAATTACGACAGAAGAGTGGGTGGTAGGACAA

Function

NR:

description
PREDICTED: N-acetylglutamate synthase, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016706 False 525 mRNA 0.57 4 27836701 27837772
TU18859 True 2109 lncRNA 0.46 3 27836513 27839103

Neighbor

gene id symbol gene type direction distance location
AMCG00016697 NA coding upstream 12519 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 19320 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 71700 27764574 ~ 27764813 (+)
AMCG00016689 NA coding upstream 225741 27607216 ~ 27610772 (+)
AMCG00016687 rapgefl1 coding upstream 251532 27576533 ~ 27584981 (+)
AMCG00016703 NA coding downstream 23086 27862189 ~ 27871186 (+)
AMCG00016704 NA coding downstream 42337 27881440 ~ 27888212 (+)
AMCG00016710 NA coding downstream 167181 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 200921 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 234492 28073595 ~ 28090180 (+)
G15025 NA non-coding upstream 466375 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 553944 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 562216 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1120712 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1123384 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 277815 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 279440 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 321562 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 386739 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 595881 28434984 ~ 28435256 (+)
AMCG00016705 NA other upstream 2976 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 37387 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 210423 27613105 ~ 27626090 (+)
AMCG00016691 NA other upstream 231634 27588479 ~ 27604879 (+)
AMCG00016683 NA other upstream 283393 27542486 ~ 27553120 (+)
AMCG00016702 NA other downstream 33560 27872663 ~ 27878697 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other downstream 125475 27964578 ~ 27998777 (+)
G15223 NA other downstream 265634 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 904257 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1395401 29234504 ~ 29256824 (+)

Expression


Co-expression Network