Item | Value |
---|---|
gene id | AMCG00016707 |
gene name | col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 |
gene type | misc |
species | bowfin (Amia calva) |
category of species | ecological fish |
Item | Value |
---|---|
chromosome id | CM030122.1 |
NCBI id | CM030122.1 |
chromosome length | 54868152 |
location | 27964578 ~ 27998777 (+) |
genome version | AmiCal1_2021_bowfin_Genome |
symbol | description |
---|---|
col1a1 | Enables identical protein binding activity; platelet-derived growth factor binding activity; and protease binding activity. Involved in several processes, including animal organ morphogenesis; collagen biosynthetic process; and collagen fibril organization. Acts upstream of or within skeletal system development. Located in extracellular space. Part of collagen type I trimer. Colocalizes with collagen-containing extracellular matrix. Implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Biomarker of several diseases, including alcoholic hepatitis; autoimmune disease (multiple); chronic obstructive pulmonary disease; end stage renal disease; and lupus nephritis. |
description |
---|
collagen 1a1 precursor |
id | name | namespace |
---|---|---|
GO:0031101 | fin regeneration | biological_process |
GO:0030278 | regulation of ossification | biological_process |
GO:0033334 | fin morphogenesis | biological_process |
GO:0033339 | pectoral fin development | biological_process |
GO:0005581 | collagen trimer | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0005201 | extracellular matrix structural constituent | molecular_function |
id | description |
---|---|
K06236 | COL1A; collagen type I alpha |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
AMCG00016707 | True | 9655 | mRNA | 0.53 | 61 | 27964578 | 27998777 |
TU18885 | False | 221 | lncRNA | 0.44 | 1 | 27992062 | 27992282 |
TU18886 | False | 205 | lncRNA | 0.45 | 1 | 27992588 | 27992792 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
AMCG00016704 | NA | coding | upstream | 76366 | 27881440 ~ 27888212 (+) |
AMCG00016703 | NA | coding | upstream | 93392 | 27862189 ~ 27871186 (+) |
AMCG00016697 | NA | coding | upstream | 140584 | 27822673 ~ 27823994 (+) |
AMCG00016698 | lsm12,LOC107708984,LOC107562026,LOC107693683 | coding | upstream | 147385 | 27810648 ~ 27817193 (+) |
AMCG00016696 | NA | coding | upstream | 199765 | 27764574 ~ 27764813 (+) |
AMCG00016710 | NA | coding | downstream | 7507 | 28006284 ~ 28028274 (+) |
AMCG00016708 | LOC106607474,LOC106600853 | coding | downstream | 41247 | 28040024 ~ 28051031 (+) |
AMCG00016711 | NA | coding | downstream | 74818 | 28073595 ~ 28090180 (+) |
AMCG00016720 | NA | coding | downstream | 155985 | 28154762 ~ 28181038 (+) |
AMCG00016722 | LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 | coding | downstream | 281721 | 28280498 ~ 28286427 (+) |
G15025 | NA | non-coding | upstream | 594440 | 27369589 ~ 27370138 (+) |
G15005 | hoxb7a,hxb7a,hoxb7,hoxb7ab | non-coding | upstream | 682009 | 27281424 ~ 27282569 (+) |
G14992 | NA | non-coding | upstream | 690281 | 27262890 ~ 27274297 (+) |
G14803 | NA | non-coding | upstream | 1248777 | 26715569 ~ 26715801 (+) |
G14802 | NA | non-coding | upstream | 1251449 | 26712231 ~ 26713129 (+) |
G15224 | NA | non-coding | downstream | 118141 | 28116918 ~ 28117190 (+) |
G15226 | NA | non-coding | downstream | 119766 | 28118543 ~ 28119649 (+) |
G15253 | NA | non-coding | downstream | 161888 | 28160665 ~ 28160887 (+) |
G15270 | NA | non-coding | downstream | 227065 | 28225842 ~ 28230979 (+) |
G15328 | NA | non-coding | downstream | 436207 | 28434984 ~ 28435256 (+) |
AMCG00016702 | NA | other | upstream | 85881 | 27872663 ~ 27878697 (+) |
AMCG00016706 | LOC102299446 | other | upstream | 125475 | 27836513 ~ 27839103 (+) |
AMCG00016705 | NA | other | upstream | 131041 | 27829268 ~ 27833537 (+) |
AMCG00016699 | LOC106607176 | other | upstream | 165452 | 27777427 ~ 27799126 (+) |
AMCG00016690 | NA | other | upstream | 338488 | 27613105 ~ 27626090 (+) |
G15223 | NA | other | downstream | 105960 | 28104737 ~ 28105711 (+) |
AMCG00016731 | NA | other | downstream | 744583 | 28743360 ~ 28761192 (+) |
AMCG00016739 | wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 | other | downstream | 1235727 | 29234504 ~ 29256824 (+) |
AMCG00016769 | NA | other | downstream | 2023830 | 30022607 ~ 30107727 (+) |
AMCG00016772 | g6pc | other | downstream | 2074161 | 30072938 ~ 30083528 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000047_04479638_04501854 | NA | coding | CI01000047 | null | 4479241 ~ 4501973 (-) |