AMCG00016708 (LOC106607474,LOC106600853)


Basic Information

Item Value
gene id AMCG00016708
gene name LOC106607474,LOC106600853
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28040024 ~ 28051031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016708
ccattcttgatggtgtgtgtgtggggagcaGGTCCCATGATGCTGCCCCTGTGACACTTATGGTATACCTTCTCCCATTGGACTTCCTCTCCCTGGATAACAATCACATGGTGTTCACCACTTACTCCAACGAGGACTACGACCGGCGCAATGATGACGTGGATCCCATGGCTGCCTCAGCAGAGTACGAGTTGGAGAAGAGGGTGGAGAGACTGGACTTGTTCCCTGTGGAGCTGGAGAAAGatggagaTGGCCTTGGAATCAGTATTATTGGGATGGGGGCAGGAGCGGACATGGGACTAGAGAAACTGGGCATCTTTGTGAAGACCGTCACCGAGGGAGGGGCAGCACACAGGGATGGCAGGATCCAGGTGAATGACCTCATCGTGGAAGTGGACGGGACCAGCCTGGTCGGGGTCACCCAGAGTTTCGCAGCCTCAGTGCTGAGGAACACCAAAGGCAAAGTCAGATTCCTGATTGGCCGGGAGAAGCCGGGCGAGCAGAGTGAAGTGGCGCAGCTCATCCAGCAGACCCTGGAGCAGGAGCGTTGGCAGAGGGAGATGATGGAACAGCGCTATGCTCAGTACGTGGAGGACGAGGATGAGACTGGCGAGTACGCCacggacgaggaggaggagatgagcCCCATGTTCCCCAACGCAGAGATGGCCATCGAGGTGTTCGACCTGGCCGAGAACGAGGACATGCTGTCCCCTGTCGAGATGGACCCGGAGAAGCTGGCTCACAAGTTCAAGGAGGTTCTCCAGATAAAGCATGCGGTCACAGAGGCTGAAATTCAGCAGCTGAAGAGGAAGCTAACGCAGGCGGAGCAGGAGAAGCTGCGCTGGCGCATGGAGAAGGCACAGCTGGAGCAGAGCGTGCAGGAGAACAAGGAGCGCATGGAGAAGCTGGAGGGCTACTGGATGGAGGCGCAGAGTCTTTGCCAGGCCGTGGACGAGCACCTGAAGGAGACGCAGGCCCAGTACCAGACGCTGGAGCGCAAGTACAGCAAGGCCAAGCGCCTCATCAAGGAGTACCAGCAGAAGGAGATCGAGTACCTGAAGAAGGAGACGGCCCAGCGCCGGGCCCTGGAGGAGTCTGAGGCTTCTCACAAGGAGGAGGCCGACCAGCTGCAGGACAAGGTAGTGCCGGACCCGCAGGTGAAGACTCagaggggggatgggggggtgtgggggcagGCTGGGGAACTGTTGAGCATG

Function

NR:

description
PREDICTED: neurabin-2-like

GO: NA

KEGG:

id description
K17551 PPP1R9; neurabin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016708 True 1220 mRNA 0.59 10 28040024 28051031

Neighbor

gene id symbol gene type direction distance location
AMCG00016710 NA coding upstream 11750 28006284 ~ 28028274 (+)
AMCG00016704 NA coding upstream 151812 27881440 ~ 27888212 (+)
AMCG00016703 NA coding upstream 168838 27862189 ~ 27871186 (+)
AMCG00016697 NA coding upstream 216030 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 222831 27810648 ~ 27817193 (+)
AMCG00016711 NA coding downstream 22564 28073595 ~ 28090180 (+)
AMCG00016720 NA coding downstream 103731 28154762 ~ 28181038 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding downstream 229467 28280498 ~ 28286427 (+)
AMCG00016721 NA coding downstream 257571 28308602 ~ 28345826 (+)
AMCG00016728 NA coding downstream 607901 28658932 ~ 28660893 (+)
G15025 NA non-coding upstream 669886 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 757455 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 765727 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1324223 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1326895 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 65887 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 67512 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 109634 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 174811 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 383953 28434984 ~ 28435256 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 41247 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 161327 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 200921 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 206487 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 240898 27777427 ~ 27799126 (+)
G15223 NA other downstream 53706 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 692329 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1183473 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1971576 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 2021907 30072938 ~ 30083528 (+)

Expression


Co-expression Network