AMCG00016709


Basic Information

Item Value
gene id AMCG00016709
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27991647 ~ 27997674 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016709
ATGCCTGTCCTTCTGTTGTCAGCAGTGTGTCTGGCCGGGGTCCTGACAGCCAATGCAGACGTCAAGCTTAATCCACAGGTGGGCCAGTTGTTTGTGTACGAGCTGGACAGGAAAGTCTACCAGAACGAGTTCCCCCCCTTCCTGCAGCAGTATGGGATAGTCAATGATGACTCCATGGTGTTCAAGTGCAGCCTTCAGCACTTCCCTGATCTGCCCCGCTGGCTGCGCTACACCCAGAGGAGCCCCCGCCACAATGGCTTCCTGTACGGCACGCCGATGCCCCAGGACCAGGGCAAAGCCATCATCGAGGTCGTGGTTACAAATCGGCAAACATATGACACCTTCAGGCAGAAAATCATGATCTCGGTGGGTGCCCCAGTGAAGAGGATGCCCTATCAGGTGGAATTCTTCCTCCCTCTGAGAGATGTTGAGGAAGTGCTGCCCCCTGGTGTGCAGGATGAGGTGGTGCAGTATGCCAAGGTCCTGTGGCAGACCGAGCGCCTGGATGTGGTCAACATCACCTCTGCACTGGACAGGGGGGGTCGTGTACCCCTGCCTCTGCCAGGACACAAGGAGGGGGTGTACATCAAACTGGGCTCTGACCGGGCCTTTCCGGAATGCCTGAGGCAGCTCCAGAATCCCAAGCACCAGCAGGAGTGCGAGCAGGGCATGGACCCCGTGCCATGTGCTGTGTGGCTCAGTGCCCACAACCGGATTGACTGGTGCAATACCATGCTGATCGACCTGTCCAGAAGGGTGCCCCCTCCTCCAGTCCCCACGCCCGGCTCGGGGATCCTTCTGGATGACGATCTGTATGACCCACCGGAATCTCCCGAGAGCCGGGACTTCTTCCCAGACTACATCGGGACCGTGCTTGTGCCCTTCGCGTTGGCCCTCATCCTCTGTGTCATTCTAGCCTACATCATGTGCTGCCGAAGAGAGGGGGTgGAGGAACGGGACACAAAGACGTCAGATATCCAGCTGCACCACCATCACACCATCCATGACAACACAGATGAGCTGAGGATCATGGCTGGCAGCCGCGGGGTCCCCCGGCCCCTCTCCACGCTCCCCATGTTCAACGCCCGCACCGGGGATAGGGTGCCCCCCCTGCAGAGGCCCTTCCGCTCCGACAGCGCCCACATCCCCCTCATCCTGGCCCAGCAGGACCCAAACATTGACACCCTGCCC

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016709 True 1191 mRNA 0.60 9 27991647 27997674

Neighbor

gene id symbol gene type direction distance location
AMCG00016701 tmem101 coding downstream 148979 27840195 ~ 27842668 (-)
AMCG00016700 NA coding downstream 182535 27806349 ~ 27809112 (-)
AMCG00016695 NA coding downstream 253218 27732315 ~ 27738429 (-)
AMCG00016694 LOC105013104 coding downstream 284118 27701012 ~ 27707529 (-)
AMCG00016693 LOC107388104 coding downstream 322235 27655748 ~ 27669412 (-)
AMCG00016713 NA coding upstream 94570 28092244 ~ 28107936 (-)
AMCG00016714 NA coding upstream 150153 28147827 ~ 28148678 (-)
AMCG00016719 NA coding upstream 198753 28196427 ~ 28209980 (-)
AMCG00016716 NA coding upstream 214170 28211844 ~ 28214306 (-)
AMCG00016715 NA coding upstream 218006 28215680 ~ 28221102 (-)
G15206 col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806 non-coding downstream 3218 27979546 ~ 27988429 (-)
G15207 col1a1,col1a1a,LOC107662397,LOC100286406,LOC106600852 non-coding downstream 24791 27964543 ~ 27966856 (-)
G15201 NA non-coding downstream 105087 27885086 ~ 27886560 (-)
G15200 NA non-coding downstream 107217 27883639 ~ 27884430 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding downstream 176183 27810638 ~ 27815464 (-)
G15228 NA non-coding upstream 5565 28003239 ~ 28058063 (-)
G15254 NA non-coding upstream 163013 28160687 ~ 28160940 (-)
G15291 NA non-coding upstream 286688 28284362 ~ 28286445 (-)
G15330 NA non-coding upstream 453724 28451398 ~ 28451632 (-)
G15364 NA non-coding upstream 684164 28681838 ~ 28682338 (-)
G15076 NA other downstream 562996 27424893 ~ 27428651 (-)
G15067 NA other downstream 587725 27401676 ~ 27403922 (-)
G15026 NA other downstream 621508 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 712313 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 987940 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 132338 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 783798 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1204198 29201872 ~ 29225587 (-)
G15706 NA other upstream 2203785 30201459 ~ 30202351 (-)
G15787 NA other upstream 2528618 30526292 ~ 30529500 (-)

Expression


Co-expression Network