AMCG00016710


Basic Information

Item Value
gene id AMCG00016710
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28006284 ~ 28028274 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016710
ATGATGAAGACTGAATCCCCGTCCGCAGCCAGCGCCCCCAGCACCACCTCCAACCTGAGGAGCCCTTCCCCACACCGAAACGCGTACGAGGCTGGCATCCAGGCACTAAAGCAGGCGAAGGATGCCCTCAATGCTGCGAACGGGGATGAAACCCGGGAATGCAGACCCAAGCCCAACTCCCGCGGCCGGAGGTACGGCTCCAACGTCCACCGCATCAAGAACATGTTCCTGCAGATGGGCTCCTCTGTGCCGGGGGAGGGCGAGGACCCGGCGAAGATGAAGGACAGGTCGGTGCGCCTGTCTCTCCCCAGGGCCAGCAGCCTGAATGAGAATGTGGACCACAGTGCGCTGCTGAAGCTGGGTGCCACCGTCTCTGAGCGCGTCAGCCGCTTTGACTCCAAAGTGGAGGGTCAACCGCGGCAGCCGTCGGGTTTCTCCAAACTGCAGGAGACGCGCAAGATCTTTGAGCAGCGCCACTTACAGGAGAAGCAGGCGGCCACCAACCGCATCCTGCTCAAGAAAGAGCGGGCCTCAGGCTTTCAGGACAGCCGGCTGGACGTGGTGGTGCGTTTCAATGGCAGCACAGAGTCTCTGGACAGTTTGGACGCGGGGGGCACCGGGGAGGCAGTCTCCCCCACCGTCAGCCAACTGAGTGCCGTGTTTGAGAAGGCTGACCTCCGTAACAACCTGCACCggccccccacctccccattGCCCTCCCGGGGGGTCAGCCCACCACCAGGGAAGGTCGGGGTGCTGAACTCCAAAATCATCACCAAGAGGGCACGGGTCTTCCCCCCCGCCACGCAGGAGGAGGGCGGTAGCCCGGCGGCGCTGGGGCGAGTGAAGGATCAAGACGGCTCTCCCAGTGGCAGGGTCAGGGCAGCAGCCAGGAAGGAGGACGGCTTCTCCTCTGAGGGGGCGAGCCGAGCCTCGGCCGCAGAAGAGCTGCGCAAGATCAGACCGGTGGAAGTGGAAGAGAGCAGAGAGGAGTCTGAGGGGGTTGAGGCGGGGTCTGCAGGCGACACAGGAGCCACATCCGGGGACCAAGAGGAGAGCAGCGCCTCTGAGGGTGGGAGCCGGCTGGTGCAGGCGGAGGTGCACGCCTCCCTGGAAAACGGGGAGGCTGTCTCCGAGCGAGAGTCCTTCAAGACCCCGGGCTCCGAAGCCTCAGGAGGAGCAGAGGAtgaggaggagcagcaggagcaaggtgaggagggaggaaggggCAGAGACGGGGAGCTGTGCGAGGGCCTGGGGGACTCTCCTCAGGGGGAGGACATGTGCGAGGAGTCACGCAAGGAGGATTACTCCGAGGCCGACCTGGTGGATATCAGCGCCTACAGTGGGATCGGCGAGGACTCGGGCGGCAGCCAGCTggacgaggacgaggaggctgaggaggaagaggatgagCCCTACGAGCCGGAGTCCAGCTGTTCCGAGATGCCCGGGCTGCCTGCTGAGGAGGAGACGCCACCCAGCCGCAAGATCCGCTTCAGCACTGGGCCCATCAAGAGCTGCTGCACGGCAAAGCGAGACCTCTGTCTGTCCTGTAAGCGTCTagttgcagcagcagcagcagcagcactgaaatGGCACTTCCTGGGGCTGAGGAGATGGAAACCCCAGCGCCTCTCAAGCCCTGCAGTTTTGGCCTTTGAGTCCGAAAGTGATTCTGCGGGGCCCCGTCAGCCTGTGGGACCCTCCAAATCGACGTCTTTGGGCAAGGTGGCCCTGTCCTACTTCAGCAGCCGTGCAGAACGCAGCAATGCTGAGACAGATCTGCCTGGGGCCCAGTCCAGAGGCAACGAACCAGATGCTCAGGATCCCTGCAAAGAGATGTCTGCTCATCACTCCCCACTCCTGCAGCCGCTTGTATCGAAACTGCTGACGATTACCGACCTAGCATCTGCACCTAATTTAACTTCCATCTCGCTCTGTCAGGGAATGGTGACTGCAGAACGGTCCGTGTCTTCTCATTACTGCAAGGAGCaccccttccccctctcccgGGCCCTCTACTGGAGGCAGCTCAAGCGATTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016710 True 2049 mRNA 0.63 4 28006284 28028274

Neighbor

gene id symbol gene type direction distance location
AMCG00016704 NA coding upstream 118072 27881440 ~ 27888212 (+)
AMCG00016703 NA coding upstream 135098 27862189 ~ 27871186 (+)
AMCG00016697 NA coding upstream 182290 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 189091 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 241471 27764574 ~ 27764813 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 11750 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 45321 28073595 ~ 28090180 (+)
AMCG00016720 NA coding downstream 126488 28154762 ~ 28181038 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding downstream 252224 28280498 ~ 28286427 (+)
AMCG00016721 NA coding downstream 280328 28308602 ~ 28345826 (+)
G15025 NA non-coding upstream 636146 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 723715 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 731987 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1290483 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1293155 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 88644 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 90269 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 132391 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 197568 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 406710 28434984 ~ 28435256 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 7507 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 127587 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 167181 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 172747 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 207158 27777427 ~ 27799126 (+)
G15223 NA other downstream 76463 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 715086 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1206230 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1994333 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 2044664 30072938 ~ 30083528 (+)

Expression


Co-expression Network