AMCG00016712


Basic Information

Item Value
gene id AMCG00016712
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28130012 ~ 28157200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016712
CCGTGATGCATCGCTTTAAGCCTCTCGAATACTTTTTTCAGCAGAACTCAGACGGAAACCGTTTCTGTGAGAAAATGAGAGACTGACAGCGCTTGTGAAACAATAATCATTTGTTTCTTCAGGCTGCCGATCTACGGTTCTCGGTATCCTGGGGCGGCTGCCATTTGCCAGGTAGTTCCTGTCAGGTTTGCTGGCTCGCCTGCTGCTCGTCGGCGGGAGAGACCGCAGCCCCTGGCCGCTCGCTCAGAGCTCATTGCCCGCTTGCGGCTCTGAGAGACACCGGTGACACGGGTCCGGCCTGCGTGTCTGGCCGATGAACCCGAGCGTGAACGGGGGTCCCAAACGggTGTCATGTGAGTGAGAAGTCGGGGAAGGTGCAATGCTTTCAACACAAATGCCTGAAAATGGTCCGGAGCCTAAAGAAGTCAAACAGTGGCTCAAGACCAGGCTGGCCCTGTCTCTCAAGGCCTTGCAGAAGCGCTACGTGACCTCTGACACCGCCGTCACCAGCGACGATGGCGATGCCAACGCCCTGTGCTGCGCTCTGGAGGCCGTGTTCATCCATGGCATCAAGAACAAGCACGTTAGGACGGAGGCCATGGCCAGGGGGAAGAAGGGCCTCCGGGGCCCCCTGCCTCAGCCGGTGTTCTGGGCCCTGCTGAAGACTGTCACTCACCGAGATGTGATCACCGAGCTGGAGCATCTGAGCTTCATCAGCACAGACGTGGGCCGCTGCCGGGCTTGGGTTCGACTGGCTCTCAACGATGGACTGATGGAGTGCTACCTGATGTCCCTGCTGCGCGAGAGCTCACAACTCTCCGAGTATTACCAGTCCACAGCCCTCTTATTTGACTCAGAAGATCGTGAGGTGCTGCTTAGCTACCTCCAGGGCCTGACCTCCCTGTCCTTCGAGCTGTCCTACAAGTCTGCGGTGCTCAACGAATGGACTGTCACTCCGCTGATGTTGGCGGGCCTTGTGCCCAGCTCCGACTCCCTGGAGCTCCCAGCCCCGATAAATCCCGTCGCTAAGCGCAAACAGTCCTGGGATTCCACATCCCAGTCTTCCGGTTCCGACATCATCGAAGTGCAGCACAACTCTGGGCCGGCCGCTCACCAGGCCAGGAACGTGGGCTCCACCAAACTCAATGCCTCCAGTCTCAGCCTGGACACCACTGGCTCTTCCCAGCTCTCCTCCAGCCTCAGCTCAGATAGCCTTCTGCAGGTCAATGGCCAGAAGAGTCCAGACAAGTCCTCCGAGGAGCACTGGCCCAGCGACCTGGATGTACTCCCCACCGAGTCTTCACCAGAGTTAATGACGGACTTCAGTGAAAATGCCCATTCTAGTGACGACTCCGGTCTATCCAGCCAGGCTCCGCTCCCGCTGTCAGAGAGCACGGAATCCAGCGGCTCTGATGGCGAGACACACCACCCAGCGACTCCTCTGGCAGACCCTCCTACCACCGGCCCCTCGGCCCCTGTGCTGCCCCTGACCAGCACAGACATTCCCGGGGAGCAGAGCAAGCCAAGGCAGAAGCCGGTCCCTGATCCACACTCTCCTGCAGCTGAGCCGACTGTTTTGAAGGTCTTCATCCCACAGACGTCTCTCCCCGAACCTGCCTCGTGCCCCTCTGTAGAGGAGCAGCCGCAGGGCGATGCACCAAAGCGCACAGACAGCTGCTTGAGCAGCTGTCTCTCTGTAGATTCCTTACATTCCCCAACAACTGGGCTTCCCAAAAACAGGAGCTGGATATCAGAGGATGACTTTTATAAGCCATGCCAAGAGGAAACCTCCAGACCAGAGGAGGCAGTGTGCTGTGGTGCTGCCCTCGTTAATGGAGATGTCCCGGCTGTGCCTGTACCTGAGCCTGAGCCTGAGCAGCCCCCACCCAGTGTGGTCCATCGTAGACAGACGGGCCTAGTGAACCCATTCCGTGGGCTTCTGAAGCTCGGCAACCTGGAGAGGCGGGGGCCGGTGGGGATCTGGAAGGAGTACTACTGTGAGCTGTCCCCCTACGAATTCCGTCTCTACCTGAACGACGAGGAGCGCACCTGCTGCGAGAACTGCTCCCTGCGGCGCTGTGAGTCTGTGCGCAGCCCCAACAGTGACGGCCGCTTCGAGCTGCACTTCACCGGGAAGAAGCTGTTCCTGCGAGCCCCCTCCCAGGACGAGGCCGAGGACTGGGTGGACCGGCTCTGGGAGGCCATCACTAAGTTACGCCCGGCCCCTCTGGATGAACAGTGGGAGATACTGCAGGCCTCTGACCGGGGCAGACCGGAGAAGCCCACGCCTGCTTCTTCACCCGCCTCCAAGCAGCCCAGCCTAGAGGAGAGCCAGCCGCCCGTGTTGTGCTGGATCCGGGACACCGACCCCGAGCAGGACGCCATCAAAGAGACAGTGCTGTACCACTCCACTGACGGCAGGAGCTGGACGCCCTATGTTTTCTCGCTCTCCCTCGAGGCCCTCAAGGTCTTCCGGGTCCAGCACGGGCAGAAGCTCCCGCACTGCACGCATAGCATTGAGTCCATCAGGGACGTGGTGCCGGACACCTCCCAGGGAAGCCCGGCCTTCTTCAAGGTCCTGACATCCAAGTGCACCCTCCTGCTGCAGGCCGAGTGCGAGAGAGAGGCGCACTCATGGCGAAGGCTGATCCGTGGGGCGCTCAACTCCTACCTGGAGACCACGGAGGATGAGGCCTCGGGAACTGGGGATAGCAGCAACCTCCACCGGCTCATCCAGCACAGCCTCCGGGCCGGCACCACGCTCCTGCCCTACCTCTGCACTGTCCCAATAGAGAGAGGAATGGATGTGCAGAAGTTTAAATGTGCAGGCTGCCGCATACAGATTGGCTTCTCCTTCGGGAAACCCAAGCTGTGTGAATATTCCAGGCAGTATTACTGCGATGGCTGCCACCAGGGAGAGGTTTCTGTTATTCCATCCCTGATCATTCATAACTGGGACCTTGCCGCCAGAGAGGTTTCCCGACCGGCTATGAAGTTTCTCGCTCAGATTGCCCACGAGCCCCTGATCAACATGGAGCGCCTGAATCCTGGTCTCTACAGCCATGTGGATCAGATGATGCAGATCTACAACAGCCGGCAGAAGCTCAGGCTGCTGGGGGATTATCTGAAAACCTGTCGGAGTGGCGCTATAAAAAACATGCAGGCCAAACTCCAACACAGACATTATCTCCTGGAATCGGCACACAAGTACAGTGTGGCGGATCTTCGGCAGATCGCAGAGGGGCAGTATGAGGCCTTTCTGCAGACGATTATCCAGTTTGGTTCCATCCATGTCTACAACTGTGTCCTTTGCACCCAAAGAGGCTTCATCTGCCAGATTTGCAACCACGATGACATAATTTTCCCTTTTGAGTTCAGTACAACGACCAGgtGTCAGGAGTGCAAGACTGTGTTTCACTCCTCTTGCAAGGCGCAGTCTGCTGCCTGCCCTCGCTGCCTGCGGCTGCAGAAGTACCTGGAGAGGGAGCTGCAGGACTAGTGGCAGCCAGGCCTCGGCACCCGGAGTGGCTCTTCTTCAAGCAGCTACCTTGAGAGACCAATGCCAATGAAAGCCTCCAGCAATGCCCCTGGAGATTACACAAGTTATTGTTCCCCCTCCGATTATCTCACCGTGTTACAGCTGTGAACAGTCTCTATAAGGGCCATGCTTGCACAGTGGCTCTGCACGAAACTGTCGGCGGTGGTGGAGCTTTACAGAGCCAGCGTGCTCTGCTGAGGGACCCTGTGGGGGCTTTTGAAATCTGTGTGGCCACAGTGTGTCCTGTCGGGTGAATGAAGTGGGAGGAACATGGGTGAGGAAGAGCTCACCTTTACAACACTacgattgtttttttatatataaatgtccaCTTCCACTTTTTGAAACTTAAATACACTTGTGTGTGGCCAAGCCCCCGGGAAACAACGCTGTAGGAAGAAGCAATTTcgtttttggtttttggttaCTAACACAAGCCCAGCCAGGAGTTCTCCACCTGTTTTGATGAAGACATTGGGttcttagttttttattttaaatgagaatagACACTTGTGGTGATGTTTTGGGGTTCTCAGATTCAACGTTGGTATCTGGTCAGTTTGCTCTTCCTTGCTCTCGAGCTGTGAGCAGCGGGGATCAGCCCGTCTCTCTTCATCGCCTCGGCAGGCTGTGTCGGTCCACCTGGTGTGCGCAGCCCATGCCAAGCCGCAGGGCAACATCGTGCCATCCCATCGCAACTCCTCCAAACATCACTCAGGGTATGAAGGTCGCCTCCCCTTTGATGGATTTAAAGGCCAGTTTTATTTGACCTTCTTCGGTGTGCTGCTTTTAAcctcttttgcttttatttattcttatttccttttcattaaatgtgcaGGGAGGGTCCCCCCTTTCTCAGAAGCACATATTTCCTCTCTTTCAGACAGTCGGCacatgtccttttttttttcaggaatgtttttttcttgttcttgcactgctggaatttatttttgattaccTAATCTTTGCAGACCAGGGAAAAAGTTGTTGTTGGGGGTTGGGGTGGaatatttacaaagaaatgaaagtgtaattgtatagcaaattatatttaagaGGAACGATTAGGGATATGTAGTTTATGTGTATAAGtaagtatctttttttttcatataaaacatttctcctttaattaatttccagcTCTCATTCTGGGCTATTTTCTCTAATGTTAACACTGCAAGCACTCATTTGTGAACTTTGTACAGaagtaagttttatttttcttcctgttttttaaaaatatggcTTACTATATGAGGATAAACATTTAGTTTATGGAAATCAATAGTATCTAATGAATAGTAGGAAAATGAAGTGGGAAGTATATATTAAgagatacatttgtattgcattttgttgtCCACTTACTAATTTTATATGAAGGATTAGGagagattatttaaaaatatacacaaccAAAACATGGAGTAAAAGTGTGTGCGTAACCAAatttttagattatttatttttattgagatttttttttaaatttgctcGTGAATAAGAATGCACTATTATCATAATGATAGATGACTTAAATGAATATCATTATTCTAAATTGGTGCTACAATTACAGCGGTGCCAGATAGTATACATACGTAGACTTATATTTGCACCGTGCAATTATCTTGGAAATTGAGCTGAATCCTTTAAGTCCTGGTTTCACAGGCCCATATTGGCACTAGTCCTGGTCTACTACTAAAATCTTAATTTAGGTGAGTAGAGCTAATCAagctctgtgaaaccagctaTATGAACCATATTCTTGACCATCTGAGTGGGAAAAAATACTCCCGTTCCACTGCAGTATTCCTGAAATGTAATCTTAAGACTGAAACTAGAAACTCCAAGCTCCCTCTGTGTCTGGGGGTGTTATTTCTGAACATTTGATGCTATAGGAtctgtattaattaatataggGGTTATAAGACGGGCGTTTGCTTTGATGGCAATATAAAATGATCATCCAAACCCTTGAAGAAGAGCACTTAAACTCTTGGGTTGTTCACTTTactataaataactttttttctttccataaatTGTGCCTtcatttgactgttttgtttagtgtggcacattttatttattaaatatggcacatttttataatatatatgcatacacacacattgtatattGATTGTATGGATGTTCTGTTGTTCAGCATGTAATGTAGTTGAAATTTCCACTGTCCATTGtgccaaaaagaaaaggaagcatATTGCAATCATGTTTCTGTAATTTTAAGTCACCTACAGTTGTTTATGCACATACATTGTGAATGTATGTGGtggtaaatgttaaaaaataatttagggGTGACACAGTGTGTACTGCATGTGATTTGTCTTGCCTGTAAATCACTTTAATTGAAAGATCAATTCACTGAAGGTGAAAGCCACTTCGCTCGATGCCAGTAAACGCCTGCAGCTGTTCCCACCTGCGTTAGTCATCCTTGTCTAGCACACTCAACACCGAGTATTACTGGGTcttggcaaaataaaataagatgttCTGATACATCGACAGTATGGCACATCCTAATATTTAGACCACTTTCATCCCTGAACTAAAATTGGAGTCTGtagaatatacaaaaaaaaaaaaaatgtaaataataaatacagctaCTGGACTCAAACCAATCCATGCTGGTCAGTCTCAATGCGATGCAGACCTGGGCCTGCAGTACATCAGTCTTGAACCCACCAATCCCAATAAACGTATCGTTGGCTTCACATTCTGGAGGCTTTTGTGCCCACAAAGTAGTGTATCACCATGCTTCCTCCCAAGTTCTCCTTTTTCCTACCGCACCGTCTACACCAAAGCATTACCCAGTTCATAGTGTGCAATTGTATGATTatcaaaaaatgaagaaaaatcacaagcaatctttttttatttttccttgttaCTATCTGAATCGCATCATTACCACATTTTCAGATGGTACGGTGCACTTTTTTCATGGGCTgaatttaagattttaatttattttttattctgatttTTTGGCTGTATTCTTGATGCTTTTATTATAGCCACAAAACTTTGAAGATGTCTATATTCAGTTTGGGTCTCTCTGAACGTCTCCCTTGATTGTATCAGGTGTAGGGGAGGGGGGtgcctttttattgctcttATTAACCTAGTTTGTACCAGATAATCACTTTAATAATGTAAGACTAGTTTTCTTACTTTTAATACAGGGTTATTTCCAGACTCAAGCCACAGCTGTTGTGTAATCTAAATCCTGTTTCCTGAGAGTGTGCACTTTGTCAGTTCCTGTTTGAATACAGTAGGGGGTAGCATTCCATTGTGTCTGTGTAGCAAGAAGGAACATGTCTTCAATCTATGCACAAAATCCAGGGCTGGGTCTCCGATCTtcccctctccccttccctTAGCACTCCACTCGGGCACTGGCATCCCAATCCTTATGGACCAAAAGGAGGCAATCCTCTTTCTCCTGTATGTCCTTTCTAGACATACTGTGGGATTCATGAGCTAGCCACATGCTTTCCATTGGAGTTGAAGGTTGTTGTTGTCCTCCTCCCCCCCCTATCACTGCCTGCATAGTAGGGCAACATTGATAAATTATACCCTGTGGTGTTAAGAGGAGTGGGATAGAGGGATGTGTTTGAGATCCAGCTCGTAGTGAGCTGCACAGCA
>TU18956
aataaaataatatgttCTGATACATCGACAGTATGGCACATCCTAATATTTAGACCACTTTCATCCCTGAACTAAAATTGGAGTCTGtagaatatacaaaaaaaaaaaaaatgtaaataataaatacagctaCTGGACTCAAACCAATCCATGCTGGTCAGTCTCAATGCGATGCAGACCTGGGCCTGCAGTACATCAGTCTTGAACCCACCAATCCCAATAAACGTATCGTTGGCTTCACATTCTGGAGGCTTTTGTGCCCACAAAGTAGTGTATCACCATGCTTCCTCCCAAGTTCTCCTTTTTCCTACCGCACCGTCTACACCAAAGCATTACCCAGTTCATAGTGTGCAATTGTATGATTatcaaaaaatgaagaaaaatcacaagcaatctttttttatttttccttgttaCTATCTGAATCGCATCATTACCACATTTTCAGATGGTACGGTGCACTTTTTTCATGGGCTgaatttaagattttaatttattttttattctgatttTTTGGCTGTATTCTTGATGCTTTTATTATAGCCACAAAACTTTGAAGATGTCTATATTCAGTTTGGGTCTCTCTGAACGTCTCCCTTGATTGTATCAGGTGTAGGGGAGGGGGGtgcctttttattgctcttATTAACCTAGTTTGTACCAGATAATCACTTTAATAATGTAAGACTAGTTTTCTTACTTTTAATACAGGGTTATTTCCAGACTCAAGCCACAGCTGTTGTGTAATCTAAATCCTGTTTCCTGAGAGTGTGCACTTTGTCAGTTCCTGTTTGAATACAGTAGGGGGTAGCATTCCATTGTGTCTGTGTAGCAAGAAGGAACATGTCTTCAATCTATGCACAAAATCCAGGGCTGGGTCTCCGATCTtcccctctccccttccctTAGCACTCCACTCGGGCACTGGCATCCCAATCCTTATGGACCAAAAGGAGGCAATCCTCTTTCTCCTGTATGTCCTTTCTAGACATACTGTGGGATTCATGAGCTAGCCACATGCTTTCCATTGGAGTTGAAGGTTGTTGTTGTCCTCCTCCCCCCCCTATCACTGCCTGCATAGTAGGGCAACATTGATAAATTATACCCTGTGGTGTTAAGAGGAGTGGGATAGAGGGATGTGTTTGAGATCCAGCTCGTAGTGAGCTGCACAGCACTGTTACAAGAATGTCATTTGCCttttaaggttaaaaaaaaa

Function

GO: NA

KEGG:

id description
K23282 PLEKHM1; pleckstrin homology domain-containing family M member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016712 True 7225 mRNA 0.49 12 28130054 28146016
TU18956 False 1216 lncRNA 0.41 2 28130012 28157200

Neighbor

gene id symbol gene type direction distance location
AMCG00016713 NA coding downstream 22076 28092244 ~ 28107936 (-)
AMCG00016709 NA coding downstream 132338 27991647 ~ 27997674 (-)
AMCG00016701 tmem101 coding downstream 287344 27840195 ~ 27842668 (-)
AMCG00016700 NA coding downstream 320900 27806349 ~ 27809112 (-)
AMCG00016695 NA coding downstream 391583 27732315 ~ 27738429 (-)
AMCG00016719 NA coding upstream 39227 28196427 ~ 28209980 (-)
AMCG00016716 NA coding upstream 54644 28211844 ~ 28214306 (-)
AMCG00016715 NA coding upstream 58480 28215680 ~ 28221102 (-)
AMCG00016717 LOC103474271 coding upstream 72575 28229775 ~ 28253184 (-)
AMCG00016718 NA coding upstream 107144 28264344 ~ 28272545 (-)
G15228 NA non-coding downstream 71949 28003239 ~ 28058063 (-)
G15206 col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806 non-coding downstream 141583 27979546 ~ 27988429 (-)
G15207 col1a1,col1a1a,LOC107662397,LOC100286406,LOC106600852 non-coding downstream 163156 27964543 ~ 27966856 (-)
G15201 NA non-coding downstream 243452 27885086 ~ 27886560 (-)
G15200 NA non-coding downstream 245582 27883639 ~ 27884430 (-)
G15254 NA non-coding upstream 3487 28160687 ~ 28160940 (-)
G15291 NA non-coding upstream 127162 28284362 ~ 28286445 (-)
G15330 NA non-coding upstream 294198 28451398 ~ 28451632 (-)
G15364 NA non-coding upstream 524638 28681838 ~ 28682338 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding upstream 538498 28695698 ~ 28695920 (-)
G15076 NA other downstream 701361 27424893 ~ 27428651 (-)
G15067 NA other downstream 726090 27401676 ~ 27403922 (-)
G15026 NA other downstream 759873 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 850678 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 1126305 26995173 ~ 27003707 (-)
AMCG00016732 NA other upstream 624272 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1044672 29201872 ~ 29225587 (-)
G15706 NA other upstream 2044259 30201459 ~ 30202351 (-)
G15787 NA other upstream 2369092 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 3223347 31380547 ~ 31388268 (-)

Expression


Co-expression Network