AMCG00016719


Basic Information

Item Value
gene id AMCG00016719
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28196427 ~ 28209980 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016719
ACAAAGCCTCTGCACTGCGTCTGTGCAGCAGCCGACATTGGTCAGGTTTAGCACCCgcttttgttcgttttttttgtttgtttgtttatgattGTATTATATGTTTGTATGCAAATGCTGTTAATATTGAGATTCAAGTCTCTATTCCCCCTTCCCAAAAATTGAAGGCACAATTGGTTGCGCTCGCCTGTGCTTAACAGGAAGTTAACGTGTGCACGCAGCGTGCGCTTTTTGCGTGTGACGGAAGCAATGCGCCAAATTCAACCCGGCCGCAGTGGGGAAGGAGAGGAGCCTGCCAGGCTGCGCAACATGGACGTCGACGTGCAGGTGATTGAGTTTAAAGTGCCCACCGAGCACAACAAGACGCTGTTTGTGTGGAATATCCCGCCTACCTTTTCGGAAGCCGACATTTACGCCGGCGTGAGCGAGTGCTACCGGCGCTTCGGCGCGCTGTTCTCGGTGCTGGTGTGCCGCGGTGCCGCGGGGGCGCAGCCCGGCTTCTACGCCGTGGTCAAGTTCTACTCGGCGGAGCACGCGTCCCGGGCGCAGAGAGCCACGCACGGCAGGGGGCTGTTCCAGGAGGCGCCCTTGAAAGTCAGCCTCTGCACTAGACAGAATCGATTTTTTTACCGGAATGTTAGCTATCTTCATAGCTCCAAGTGCCATGAATTGGCCAACTTCTACCTTGGCTTTAATGGTTGGTCCAGCCGGGTAGTAACGCTCAAGGATCTTTCCAAAAGCGATGGTCCTGAACAGGTGCCCTTGGGGGAAGCCACTCAGACAGTCAATTTGAAATATGGCTGCATAGTGGAATTAATTTTCACTAAACATGGAGTGAGCTGCAGGGGAGTGGGGGTGGCAGAGGAAGTTTTCCCAGCGGATACAGatCCTGAGGAGCTCTTGATGAAACGGGGAATGCTACAGAAATCGGCCAAAGAGAGAGCAATCTCTTACGCCTTCCAGAAAGTACTCTTGGTTGTACTAGACCTCCCCGGCTGCCGGGCCCAGGGCGCCTCTGCTCCCGATGCACTGCTCATGCACGTCGGGTCGCCTGTCCTGCCCGGCCGCCCAGAGAGGCAGACTCGAGTCCATAGCCGTGGACACCAGGAAAATTCCTCTCCCCAGCGGACCTTTCGGGATCTGGAGAAAGTCGAGGTGaggaagaaaaatgtgcagGAGGCCGCTTGGATGGCTCCCACAGAGATGGAGACACCAGAGCACAGGAGGGAAGCAAGAAAACCCCTCAAAGCGGAAAACCAAACTGAAGAATACCCTACCGTGACGTCGGCAAGCAAAATTAGGTTGTGTGAAGGTATGCTTAGTCTCCTGACACCACTGAACGAGGTGGTGGAAAGCAAGCAAGGATGGGAACATGCCTCCGTCAAAATGACCAGTCAAGAAAATGAGGTAGCGGAGGAACGAGCCCTGAAATCTCCATCCTCCACAAACACCAAGGCTGGTGCGGTGTCAAGGGAAATTGTGAGAGAGGGGGAACATCCCCATGTGAAGAGAGTGCGCAGAGCGGTGGACCAGGGTGGAAATTCTGATGTCTTTCGTGCCGCGAGATTTGATGCAGATTCCGACGCGTTCTTCGTCAGGGAAGCTCTTGCTCAGCCTTTCGGTGAACAACGCCGAGGGAAAGACCTGCCGGAGAAAGGACGCGACCCAGAGAAACACTCAGCGTTTGCTCCtggaaaagaaggagaaaaccCACCTTTTGCCAGCCCACGGGTGACAAATCGAATGTCTGCCAATGAGCTCTATGCGGCTGCTGCAGAGAAGCGGAACAATATCGTTCCCAGCCCGAACAGGCCTAAGCACAAGCACAGCGGAGCTCAGAACGGCCCTGCTGTTCTTTCTAGAGCAGCTGACCCAGAGCTTCCCCCTGGCACCATTTCACACTTAGCATCTCACAGCCAGGAAGCTGCGTCCCCTCAGACTCTCCAGGCTGCCCTGCAGCAGGTCCTGAAAGAGCTGCGGTCTATTGTGTCTGATGGACGCAGGCTCTCTCTGCTCAGGCAAGTTGTTGAGGTGCAGTGCCTGAGCCCGCATGCGTCGGTCAGCTGTGAGGCCGTGCTGTCGGGTCTCAGTGCTCTTTTGCAACGTGTCCTGAGTGCAGACGTACTGGAGGAGGTGCCTGAAGGAAAACCCACAGGACCCAAGAGTAGCAGTGAGCATTTGGAGTCCTACAGGGCTGGGCTCCTGCTGGCATCTTTCATTTATCCACTGATCCTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10874 RDM1, RAD52B; RAD52 motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016719 True 2235 mRNA 0.55 9 28196427 28209980

Neighbor

gene id symbol gene type direction distance location
AMCG00016714 NA coding downstream 47749 28147827 ~ 28148678 (-)
AMCG00016713 NA coding downstream 88491 28092244 ~ 28107936 (-)
AMCG00016709 NA coding downstream 198753 27991647 ~ 27997674 (-)
AMCG00016701 tmem101 coding downstream 353759 27840195 ~ 27842668 (-)
AMCG00016700 NA coding downstream 387315 27806349 ~ 27809112 (-)
AMCG00016716 NA coding upstream 1864 28211844 ~ 28214306 (-)
AMCG00016715 NA coding upstream 5700 28215680 ~ 28221102 (-)
AMCG00016717 LOC103474271 coding upstream 19795 28229775 ~ 28253184 (-)
AMCG00016718 NA coding upstream 54364 28264344 ~ 28272545 (-)
AMCG00016724 NA coding upstream 140389 28350369 ~ 28357780 (-)
G15254 NA non-coding downstream 35487 28160687 ~ 28160940 (-)
G15228 NA non-coding downstream 138364 28003239 ~ 28058063 (-)
G15206 col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806 non-coding downstream 207998 27979546 ~ 27988429 (-)
G15207 col1a1,col1a1a,LOC107662397,LOC100286406,LOC106600852 non-coding downstream 229571 27964543 ~ 27966856 (-)
G15201 NA non-coding downstream 309867 27885086 ~ 27886560 (-)
G15291 NA non-coding upstream 74382 28284362 ~ 28286445 (-)
G15330 NA non-coding upstream 241418 28451398 ~ 28451632 (-)
G15364 NA non-coding upstream 471858 28681838 ~ 28682338 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding upstream 485718 28695698 ~ 28695920 (-)
G15448 NA non-coding upstream 856131 29066111 ~ 29066388 (-)
AMCG00016712 NA other downstream 39227 28130012 ~ 28157200 (-)
G15076 NA other downstream 767776 27424893 ~ 27428651 (-)
G15067 NA other downstream 792505 27401676 ~ 27403922 (-)
G15026 NA other downstream 826288 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 917093 27265887 ~ 27279334 (-)
AMCG00016732 NA other upstream 571492 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 991892 29201872 ~ 29225587 (-)
G15706 NA other upstream 1991479 30201459 ~ 30202351 (-)
G15787 NA other upstream 2316312 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 3170567 31380547 ~ 31388268 (-)

Expression


Co-expression Network