AMCG00016722 (LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630)


Basic Information

Item Value
gene id AMCG00016722
gene name LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28280498 ~ 28286427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016722
GTCCCCATACAGCCTCCAGTTGGAAGACTCTGCTCCCCCGCGCCTCTCGGACAACACTTTCTACCATGGCCCCCAAGAAGCCCGAGCCCAAGAAGGAGGCGGCCAAGCCCGCCGCGGCCCCCGAGCCTGAGCCCCCCAAGGAACCCGAATTCGACCCCAAGAGCGTCAACATtgaatacagtgcagatcagaTTGAAGAGTTCAAGGAGGCCTTCATGCTGTTTGACAGAACCGCCACAGGAGAGATGAAGATCACCTACGCCCAGTGCGGAGATGTGCTGAGAGCTCTGGGCCAGAACCCGACCAACGTTGAGGTCCTGAAGGTGCTGGGGAAACCCAAACCCGAAGAGATGAACACCAAGATGCTGGACTTCGAGACCTTCCTCCCCATGCTGCAGCACATCTCCCGGTCCAAGGACCAGGGCACCATGGAGGACTTTGTGGAGGGGCTGCGCGTCTTCGATAAGGAGGGGAACGGCACGGTGATGGGTGCTGAGCTGCGCCACGTCCTCGCAACACTCGgagagaaaatgaaagagaatgAGGTGGAACAATTACTGGGAGGACAAGAGGATGCCAATGGCTGTATTAACTATGAAGCTTTCGTGAAACACATTATGGCTGGTTGAATCCACATCCCCAAAaggCCTGGAGGAAGAAGAAACACCCTAGTGCAACCATGTTTACTTATCCATCGTGGTGGGGCCCACATGGCCTCAACACATATGCCCATTTAAATCCCTCGTCCACTCGTCCTCAACAACTTTGTATGGATACAAAATACCTGTTCCCCATGTGCAGTTtcctgatgtttttatttatttttctgtcgttccaacaatt

Function

NR:

description
PREDICTED: myosin light chain 4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12750 MYL4; myosin light chain 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016722 True 843 mRNA 0.53 7 28280498 28286427

Neighbor

gene id symbol gene type direction distance location
AMCG00016720 NA coding upstream 99460 28154762 ~ 28181038 (+)
AMCG00016711 NA coding upstream 190318 28073595 ~ 28090180 (+)
AMCG00016708 LOC106607474,LOC106600853 coding upstream 229467 28040024 ~ 28051031 (+)
AMCG00016710 NA coding upstream 252224 28006284 ~ 28028274 (+)
AMCG00016704 NA coding upstream 392286 27881440 ~ 27888212 (+)
AMCG00016721 NA coding downstream 22175 28308602 ~ 28345826 (+)
AMCG00016728 NA coding downstream 372505 28658932 ~ 28660893 (+)
AMCG00016729 NA coding downstream 378387 28664814 ~ 28681501 (+)
AMCG00016730 NA coding downstream 395944 28682371 ~ 28718666 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 475597 28762024 ~ 28777025 (+)
G15270 NA non-coding upstream 49519 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 119611 28160665 ~ 28160887 (+)
G15226 NA non-coding upstream 160849 28118543 ~ 28119649 (+)
G15224 NA non-coding upstream 163308 28116918 ~ 28117190 (+)
G15025 NA non-coding upstream 910360 27369589 ~ 27370138 (+)
G15328 NA non-coding downstream 148557 28434984 ~ 28435256 (+)
G15329 NA non-coding downstream 164877 28451304 ~ 28451616 (+)
G15346 NA non-coding downstream 439060 28725487 ~ 28729054 (+)
G15417 NA non-coding downstream 677917 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 757290 29043717 ~ 29043973 (+)
G15223 NA other upstream 174787 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 281721 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 401801 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 441395 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 446961 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 456933 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 948077 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1736180 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1786511 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1823172 30109599 ~ 30113284 (+)

Expression


Co-expression Network