AMCG00016725 (cdc27,LOC106600875)


Basic Information

Item Value
gene id AMCG00016725
gene name cdc27,LOC106600875
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28405721 ~ 28419910 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016725
GGCTTGCTCGCTAACGGTCGGTGTGTTTAAATCCTCGGAGCTCCTTCGGGCCCTGAAACTGAACTAAAGGCGAAGAGGAGTTGCGGAGAGAGGGAAGCGAGTGAGAGGCAGAGAAAGAAGGAGCTCAATCAAGGGATGACGGTGCTGCAGGAACCTGTCCAGgcTGCGGTTTGGCATGCACTTAACCACTATGCCTACCGAGATGCTGTTTTTCTGGCAGAGAGACTATATGCTGAAGTGCACTCAGAAGAAGCTCTTTTCCTGCTGGCTACATGCTACTATCGCTCTGGGAAGGCCTACAAGGCATATCGCCTTCTCAAGGGCCATAGCTGCACTACTCCCCAATGCAAATACCTCTTGGCGAAGTGCTGTGTTGACCTTAGCAGGCTTGCAGAGGGCGAGCAGATCTTAACAGGAGGAGTTTTGAATAAACAGAAGAGCCACGATGACATTGTTACTGAGTTCGGAGACTCTGCCTGCTTTACTCTTGCTTTACTGGGGCAGATTTACTGTAAAACTGATCGTTTGGCCAAAGGTTCAGAATGTTACCAGAAGAGCCTGAATCTAAATCCTTTCCTCTGGTCTCCATTTGAATCCCTGTGTCAGATCGGTGAAAAGCCAGACCCTGATCAAATGTTCAAGCTGACATCCCTTCAGAATTTCAGCAGTTGCCAGCAAAATAATTGCCCCACGTACAGCTCTACTCACAGCGTTTCCCACAGACAGATTGATACAGTCCTGATGGAAACTCCCCAGGATACTTTAGAACTAAATAGGCTGAATCTAGAATCTTCAAATTCCAAGTATTCATCTTTAAATACAGATTCTTCGGTGTCCTATATTGATTCTTCAGTAATTTCCCCCGACTCTGTGCCACTTGGGACAGGTAGCTCTTTACTATCCAAACAGGCacagaacaaaccaaaaagtgGACGAAGTTTGCTTGGGGGACCTGCGTCTCTTAGCCCACTTACTCCTAGTTTTGGAATCTTACCACTTGAGCCGAGTCCGGGAGATGCGTCCTACCTACAGAACTTCACAAACACTGGTTCTGTGATGATGGACCCACCCTCGTCTGGAGCGCCGCCAAAGAAGTCTGTAGCCCGAATCAGCCAAGCAGGTACAAAAGCGGTGTTTGCACAGAGTGGGAACAGTAGAGACGTTCTCCCAATACCTTTTAAccagacacagagcacagcccCACAAACTAGTACGACGCCCCAAGTGCTGAGCCCGACCATCGCTGCTCCGCCCAACGTGCAGCCGAGACGCAGTTCGCGGTTGTTTACCAGTGCCAGCTCTACTGCCAAGGAGAACAGCAAGAAGTTGAAAATGAAGTTCCCCACAAAAATCCCAAACcgcaaaacaaagacaaaatccaGTAAAGGAGGGATCACAACATCAAACATGAATGAAAGTATAGAGATCCTCAAGTTAGACTCTTCTATAATTTCTGAAGGGAAGGGCAACATGGTCGCACCTCAGTTGCAAGCCTTCACTATACAGAAAGCTGCTGCAGATGGTTTGATGAACCTCATGCGTGACATGGGGAAAGGTTACCTAGCACTTTGTTCCTACAACTGTAAAGAAGCAATCAACATCCTGAGCCAGCTGCCTTCTCACCATTACAACACAGGCTGGGTTCTCAGTCAGGTCGGGAGAGCACACTTTGAGCTTGCAGAGTACATGCAGGCGGAGAGGATATTTTCCGAAGTAAGGcgcattgagagctacagagtTGAAGGAATGGAAATATATTCCACAACCCTTTGGCAtcttcagaaagatgttgcccTGTCCGCCCTCTCTAAAGATCTCACAGACATGGATAAAAATTCCCCAGAGGCCTGGTGTGTTGCTGGCAACTGCTTCAGTCTGCAGAGAGAGCATGACATCGCAATCAAGTTCTTCCAGAGGGCGATCCAGGTGGACCCGAGCTTTGCCTATGCCTACACGCTGCTGGGCCATGAGTTCGTCCTCACCGAGGAACTGGAGAAGGCCCTGGCCTGCTTTAGAAATGCCATTCGTGTGAACTCGAGGCATTACAACGCATGGTATGGCTTGGGGatgatttattataaacagGAGAAGTTCAGTCTGGCAGAAATTCACTTTAAGAAAGCCCTCAGTATCAACCCCCAGAGCTCTGTCCTGCTGTGCCACATCGGGGTGGTGCAACACGCGCTGAAGAAGTCTGAACATGCATTAGAAACCCTGAATAAAGCCATTAACATCGACCCCAAAAACCCACTATGCAAATTCCACAGGGCCTCGATTCTCTTTGCAAATGAAAAGTACAAGGCTGCTTTGCAAGAACTTGAAGAACTGAAACAGATTGTGCCCAAAGAGTCTCTGGTTTACTTTTTAATAGGAAAGGTTTATAAGAAGCTGGGTCAGACGCACTTAGCTCTAATGAATTTCTCTTGGGCCATGGATTTGGACCCCAAAGGGgcaaacaatcaaatcaaagaGGCCATTGATAAACGTTACCTCCCTGATGACGAGGAACCGGTCATTCCAGAGGATTATCCATATGACTCGGCGGAGGCCGAGGAGTCGCAGGAGAGCAGTATGACAGACGCAGATGACACGCAGCTTCACACAGCAGAAAGTGACGAGGTCTTTTAATCCTAACGATGCCAATCTGAAGTCGGCCACTTGATTTCAGTTGTGAATGACGACAAACTGCTGCTAATACAGTACCTCCTAACCTTCCTaccatctgcttttttttttttttcctccctattctttcctttttctttgccTTAGTGTTGAGTTGGGTTCACAGTGCAGCTAGTGCTCGTTCTGTTCCCACTCTGTTCACTCTCgaaaacaaatgtacactttTGTGTGGAAGTTCTCAAACTCCTCATGACGAGAAAAGAGAGATCCCTTCTGGGCTTCAGTTTGTCAGTGTTGTACCTTCTGAGGCCGAATTCCTGCAGTTATAAGAGCAAGTTCTCACACCTCCAGTCTGGAACATGTCCTCTTAAATTGAAAGCCATTTGTTAGTCTTAgtcttaatgtttgtttttattattacatcgTCATTAACTTAATAAATATCGCTATAGGAACCTGGGATTCAAATTATTTCTCTTGAGTGGCAATTATTGTATCATTTTACTTCCATTGGGACAGGTAAATGTAACTAATTGCAAAGGACAGATTGGACATTTGATTGTAGTTGACACTGGGAGGTGGGAATAATGCGCACTGTTAGCAGTCTGTGGAGATCTGGACACTGGGAGGATGTAAAGCTGGAAAAAGCAATCGGACTTTTGAAACTTACCctaaattcagttatttttcagaAGAACCTGGCCTATTCTGCAgtaattttggttttaaaactaTTTCTTGGAAAACTTGCCTTTTCAAAATCCACTTAAAGTTGTTCTGTAAGGGCTAATGAGCAGGGATAAATGCTAACCATTTGAAAGGGTACAATGGTGTCACcagttcatttttgtattttattttgttccccttTTTTTATCAACCATCATTTGTAGCCATGGAGGAGAAAACAAGAACTTTTAGTAACTTTTTAATTATAGGCACTAGAGTCAACTGACATTTTAAGTTTCATCACCATATTTCAGTCACTTAAACCAGTTTGCTTGAAGTGTTGTTAATAGTATCCTTTTTTGTGTATGAAGATGCAGCTACTAATTCAATTTTGCTCTATACAAAATGCATATGTAGGGTGcattaaacagaacaaacaNNNNNNNNNNccccccccccccc

Function

symbol description
cdc27 Predicted to be involved in cell division; cellular protein metabolic process; and regulation of mitotic sister chromatid separation. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Orthologous to human CDC27 (cell division cycle 27).

NR:

description
PREDICTED: cell division cycle protein 27 homolog

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
K03350 APC3, CDC27; anaphase-promoting complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016725 True 3756 mRNA 0.45 19 28405721 28419910

Neighbor

gene id symbol gene type direction distance location
AMCG00016723 NA coding downstream 18029 28386229 ~ 28387692 (-)
AMCG00016724 NA coding downstream 47941 28350369 ~ 28357780 (-)
AMCG00016718 NA coding downstream 133176 28264344 ~ 28272545 (-)
AMCG00016717 LOC103474271 coding downstream 152537 28229775 ~ 28253184 (-)
AMCG00016715 NA coding downstream 184619 28215680 ~ 28221102 (-)
AMCG00016726 LOC105890724,LOC107754311,LOC108413653,LOC108261365,LOC107694956 coding upstream 57604 28477514 ~ 28492616 (-)
AMCG00016727 NA coding upstream 89916 28509826 ~ 28518748 (-)
AMCG00016733 s2540,LOC106601558,LOC108434938 coding upstream 305699 28725609 ~ 28738603 (-)
AMCG00016736 dlx3,dlx3b coding upstream 529540 28949450 ~ 28953796 (-)
AMCG00016738 NA coding upstream 601717 29021627 ~ 29024518 (-)
G15291 NA non-coding downstream 119276 28284362 ~ 28286445 (-)
G15254 NA non-coding downstream 244781 28160687 ~ 28160940 (-)
G15228 NA non-coding downstream 347658 28003239 ~ 28058063 (-)
G15206 col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806 non-coding downstream 417292 27979546 ~ 27988429 (-)
G15207 col1a1,col1a1a,LOC107662397,LOC100286406,LOC106600852 non-coding downstream 438865 27964543 ~ 27966856 (-)
G15330 NA non-coding upstream 31488 28451398 ~ 28451632 (-)
G15364 NA non-coding upstream 261928 28681838 ~ 28682338 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding upstream 275788 28695698 ~ 28695920 (-)
G15448 NA non-coding upstream 646201 29066111 ~ 29066388 (-)
G15525 NA non-coding upstream 841402 29261312 ~ 29264667 (-)
AMCG00016712 NA other downstream 248521 28130012 ~ 28157200 (-)
G15076 NA other downstream 977070 27424893 ~ 27428651 (-)
G15067 NA other downstream 1001799 27401676 ~ 27403922 (-)
G15026 NA other downstream 1035582 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 1126387 27265887 ~ 27279334 (-)
AMCG00016732 NA other upstream 361562 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 781962 29201872 ~ 29225587 (-)
G15706 NA other upstream 1781549 30201459 ~ 30202351 (-)
G15787 NA other upstream 2106382 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 2960637 31380547 ~ 31388268 (-)

Expression


Co-expression Network