AMCG00016728


Basic Information

Item Value
gene id AMCG00016728
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28658932 ~ 28660893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016728
ATGCTCGGGGAGTCGCGGATTGCGTTGATGTTGAAGGAGGTATGGACTCTTGCGTTCTTGAGGGATGCTTTCTTTGAGTTTGCTGGCACCGCATTCTTTCTGTTTGCCAGCTTGGCATCCACCATCCAGCGACCGGCTCAGGGGGCACCATATGGACCTTTCCTGATGGCTTCTGCTGACCCTACACAGCTTCCTCCAGAGGTTCCACACAGGGCCTCCCCAGACCCTCTCCATTTGTCTGTCACCTTTGGGATCTCAGTTGCTCTCGTGTCCCTGTGTCTGGGGTCGGCTGGAGGGGTCCATTTGAATCCCGCGGTGACAGTGGCTTTCTTGGCTGGAGTGAGGGTCAGTCCCCTGCGAGCATTTCTCTATATCATAGCCCAGCTCCTCGGCTCCATGGCTTCGTGTGCGCTCCTCCTGGTGGTCACCCCAGCAGCAGACCGAGGAGAACTTGGATTGAATGCTcCCAGCTCAGGAGTCTCCGAGTATCAAGCCTTGTGTGTCGAGATGTTTATCACCTTTCAGCTAGTCCTCTGTGTGCTTGTTTCTTCAGATGCCAAATTGGCCCTCACGAAGCTGGCCCCATTTGTGATAGGACTCTCTGTCACTCTAGGACATCTTGTTGCCATCGGTTTCACGGGCTGCAGTATGAATCCTGCTCGGTCTTTCGGTCCTGCCGTGGTGTCCGTCAACTTCAGCAGTCACTGGGTGTTCTGGGCCGGGCCGATGGCGGGCGCAGTCCTCGCCGCTCTGCTACACGACCTGATACTGTTCCCACGGTGGAGCGACAGGAGTGCATGGCTGAAGGACGTGAGACAGGTGGTCTTCAAAGACTTGCATTCACAGCCCAGCAGCAGGGACATAGAATAG

Function

GO: NA

KEGG:

id description
K09873 TIP; aquaporin TIP

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016728 True 870 mRNA 0.56 4 28658932 28660893

Neighbor

gene id symbol gene type direction distance location
AMCG00016721 NA coding upstream 313106 28308602 ~ 28345826 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding upstream 372505 28280498 ~ 28286427 (+)
AMCG00016720 NA coding upstream 477894 28154762 ~ 28181038 (+)
AMCG00016711 NA coding upstream 568752 28073595 ~ 28090180 (+)
AMCG00016708 LOC106607474,LOC106600853 coding upstream 607901 28040024 ~ 28051031 (+)
AMCG00016729 NA coding downstream 3921 28664814 ~ 28681501 (+)
AMCG00016730 NA coding downstream 21478 28682371 ~ 28718666 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 101131 28762024 ~ 28777025 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding downstream 257223 28918116 ~ 28929190 (+)
AMCG00016737 NA coding downstream 338768 28999661 ~ 29014142 (+)
G15329 NA non-coding upstream 207316 28451304 ~ 28451616 (+)
G15328 NA non-coding upstream 223676 28434984 ~ 28435256 (+)
G15270 NA non-coding upstream 427953 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 498045 28160665 ~ 28160887 (+)
G15226 NA non-coding upstream 539283 28118543 ~ 28119649 (+)
G15346 NA non-coding downstream 64594 28725487 ~ 28729054 (+)
G15417 NA non-coding downstream 303451 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 382824 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 396793 29057686 ~ 29058167 (+)
G15425 NA non-coding downstream 405224 29066117 ~ 29066407 (+)
G15223 NA other upstream 553221 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 660155 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 780235 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 819829 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 825395 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 82467 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 573611 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1361714 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1412045 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1448706 30109599 ~ 30113284 (+)

Expression


Co-expression Network