AMCG00016730


Basic Information

Item Value
gene id AMCG00016730
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28682371 ~ 28718666 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016730
ATGCTTGGGGCTGAGAAAGCGGCACAGGGGCGCTTCTGCATCGGTGATGGGGGAAAGAAAGGGAGGAAGGAAAATGTATCTGCAGAGCGGGACGAGGTTTTGTACGCTctgctgagtcaACAGAGGGATGAAGCCAAGGACTCGGTGGATAATGGATTAGGGTCACCAGAGGTGTTGATTAGAGTTCAGGTTTTTGACAACAGTGACCTTTCACCTTTGGCCAACGCTGCCGTGGAGGTTTATGGGAACCATTCCACTTTGATATCCGGAGTGGCGGGCAGCGATGGGGTCTTCATGGTTACGTTCCAGTATCGACCCGGGACCTGGGTCATCGTCACTGCGTCCAAACAGGGCTTCGTCACCAACTCCGCGCCTTGGCACGCCACACGGATACCCTTGTATGCCTCGGTCAGCCTCTACCTACTGCCCCAGAGACCAGCCACACTCATCCTGTATGACGACGTGGTCCAGGTTCTGCTAGGATCTCCAGGGGCCAGGCACCAGCCATGGGTGCAGTTCCAGAGGAAAGCCGTTCGCCTGCCGCTCAACTCCACCTACACGGAGCTGTCCGCAGTGCTGACCTCCGCTAAGAGCCAGTATGAGATTGGGGGCTTCCCCTACCTGCTGGGCCTGGAGAACAGCAGCTCAGGGGGGAACAGCAGCTGGCTCGAGCTGACGGCCGTAGCAGCGGTCAGCACTCACCTCTTCACCCACAACGGGACGGTCATCCAGGTGTCTGACCCCGTCCACATCTCCATCCCCCTTCCCGGAGACAGCCCGGTCAGAGCTGCGACCAGCATCCCCGTGTGGAGGTTTGATGCCAAGACAGGGATCTGGATCAGGAATGGAACAGGATATATAAGGAAGGAAGGGACTCTGCTTACCTGGAGCTTCGTGGCACCCCAGCTTGGTTATTGGGTTGCAGCCTTTCCTTCCACCACAGGAGGCATGCCTTTGAACTCCTCTGGCCTGCGGGATATCACCACCTACCACACCATCTTCCTGCTCACGATCCTGGGCTCCATGGCTCTGCTGGTCCTTATTCTACTCTGTCTGTTGCTGTATTACTGCAGGAGGAGGTGTTTGAAACCCCGGCAGCAGCACCGCAAAATGCACATCTCCTCCACGCTGGACAGTGCCAAGAAAGACCAGGGCACATCGACGTCTCACATCAACCTGATCAGCAGCAGCCACATCGAGACAGCCTCGTCCAACGGGGACATGGACACCAACACCCCTGTCATGAAGTCTACCTTCTCCTCCTCGCGGGACTTTCAGAGCTCCCGGGAGGAGTTCTTCAAACAGATCCCCTCCCAGAAACTGAGGCACTCCAAGATCAACACGGACACCATCACACGCCGGGGAGGACCCATGGAGAGCTTCCAAATGAAGGTGGCCCGCTCTACCGACGTCTCCAACAACCTGGACCCGCCTTTGCTGGATGACTACAGAAGAAGCTACAGCTCCATGGCGTCCCAGCAAACTATGGAGGACAAGAGTGGCGATGGCCACCGTCGCCACGTCAACGACAACAAAGGCTACAGCCAAGACccaccctctccccctcccctgccACCACCCTTTGACCACTACCCCGGCCACAAGCCAGATAATAAGCCTCCCGACTTCATAATGTCCCAGTCGGTGGACCACCTGGCCAGGCCCACCTCCCTGTCCCAGCCAGGCCAGCTCATCTTCTGTGGATCCATTGACCAGATGAAGGACAATATGTACAGAAATGTGATGCCCACTTTGGTCATCCCGGCTCACTACATGAGACTATCCTCTGACTTCTCTGGCATGGAACAGGCGGTGGGGATGACcatggagcagcagcagcagcagcaggagatgGAAGGCATCCAGGTCAGTCTGTCCATGCCACACCAGCTGACACctcagcaacagcagcagctgcaaCAACAAGCCAACCAGCAGAACGAGGACCCTGAGGGCCGAGGGTGGGGACCCCATCCATCAACGGGCCCCGTCCGGATCCCTGTCCTGTTCAATGACTCCACCATGTCGCAAATGAATGGAGAACTTCAGGCCTTAACGGAGAAGAAGCTACTGGAGCTGGGGGTCAAGCCACACCCCCGGGCCTGGTTCGTCTCCCTGGACGGGCGCTCCAACTCCCACGTGCGGCACTCCTACATCGACCTGCAGGGCAACGAGAGGAGCCGGAGCAACGACGCCAGCTTGGATTCGGGAGTGGACGTCAACGAGGCCAAGCCCCACAAGAGGATCAAGGAGGAGCGGGAGAGATTGGGCCACGGGTCCATGGCCTACTCCAAACTGGCCTACATGGAtgacacagagcagagcagcagcGAAAGCAGGACAGCCATGTGCTCTCCTGAGGAAAACTCTCTGACTCCACTCCTGGACGAGAGCCTGGAGAACAGGGGAGCCACCATCCCCAGAAAGGGACGCAGCCGGGGAAACAGCTCCAGGAGCAGCAACAGCGAGATTCGGCGAGACTCCATGACGAGTCCCGAAGATGAGATGAACGACCAGTCGGAAGGGGGAGATGACCAAGGGGACAACAAGAAGAGCCCCTGGCAGAAACGAGAAGAGCGCCCCTTGATGGTCTTCAATGTGAAGTAGAGCATGGGCCCTCCTGTCCCAGAGTTCTCCTGTTCCATAGGTGAGGGGAGGTCATATCCCTTGCCACAGCCCTGATCCCGTTTTCTTAAATGGTGTCGCTCTAAATCCTTCTGGAAGGGTGtggatgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016730 True 2738 mRNA 0.58 10 28682371 28718666

Neighbor

gene id symbol gene type direction distance location
AMCG00016729 NA coding upstream 870 28664814 ~ 28681501 (+)
AMCG00016728 NA coding upstream 21478 28658932 ~ 28660893 (+)
AMCG00016721 NA coding upstream 336545 28308602 ~ 28345826 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding upstream 395944 28280498 ~ 28286427 (+)
AMCG00016720 NA coding upstream 501333 28154762 ~ 28181038 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 43358 28762024 ~ 28777025 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding downstream 199450 28918116 ~ 28929190 (+)
AMCG00016737 NA coding downstream 280995 28999661 ~ 29014142 (+)
AMCG00016745 cdk5r1,LOC108426451 coding downstream 609863 29328529 ~ 29329440 (+)
AMCG00016746 NA coding downstream 651092 29369758 ~ 29371719 (+)
G15329 NA non-coding upstream 230755 28451304 ~ 28451616 (+)
G15328 NA non-coding upstream 247115 28434984 ~ 28435256 (+)
G15270 NA non-coding upstream 451392 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 521484 28160665 ~ 28160887 (+)
G15226 NA non-coding upstream 562722 28118543 ~ 28119649 (+)
G15346 NA non-coding downstream 6821 28725487 ~ 28729054 (+)
G15417 NA non-coding downstream 245678 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 325051 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 339020 29057686 ~ 29058167 (+)
G15425 NA non-coding downstream 347451 29066117 ~ 29066407 (+)
G15223 NA other upstream 576660 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 683594 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 803674 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 843268 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 848834 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 24694 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 515838 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1303941 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1354272 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1390933 30109599 ~ 30113284 (+)

Expression


Co-expression Network