AMCG00016731


Basic Information

Item Value
gene id AMCG00016731
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28743360 ~ 28761192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016731
ATGTATAAGGAGACAGTTCTGTGTCTCTGCTGGCTGGCCCTGGCTGCAGCTCTCCAGTGTCCTGATGGCTCCATCTGTCAGGACAGGAACACATGCTGTAAGAACTCGGCTGGCGGTTATGGCTGCTGCCCATCGCCACACACACTAAGTGCTCTCCTGATGGTGCCCTCCAGCTCAGAGAGAGTTCATCCACGCATCTGTCCAGATGGCTCTCACTGCCCCTCGGAGTACTCCTGTGTGGAGACTCCTGCAGGGCTGTACGCCTGCTCCCCTCTGCCTCAGGCCGTCTCCTGTGCTGATGGGAAACACTCCTGTCCTGTGGGTCACCAGTGTAGTCACGATGGTAGCTCATGCACAGAACTGAAAGAGCCCTCAGGTGTGGAGGCAGTGATTTGTCCTGATCAGGTGTCGGAGTGTCCTGATGGGACAACTTGCTGCCAGATCCCAGATGGGAGCTGGGGTTGCTGCCCCATGGAAAAGGCTGTCTGCTGTGAGGACAAGATGCACTGCTGTCCGGAGGGCACCACCTGTGACCTCGAGCACTCCAAGTGTAAGTCGGCCACCAAGGATATGCCCATGTGGGCTAAATTCCCTGCAAGGAAGAGGGCAGCTTGGGAGGACCAGCAAGTTCTAGGTGGAGAAACAGTGCAGTGTCCAGATGGCAAATCCCAATGCCCAGATGGCACCACCTGCTGTCAGACGACCACCGGGTCATACGGCTGCTGTCCCTTCACTGACGCTGTGTGCTGCACAGACCACTTGCACTGCTGCCCTGGAGGCACCACCTGTGACCTGGAGCACAGCGTCTGCAAGTCAGCCACCAAAGAAACCCCTCTGTGGACAAAGCTGCCTGCCGTCCTTAGAGATGCGTCTGTGCCCTGGCTGAAGAAGGTGCCCGCTGTGAGCAGGGTCCCCAAAGATGAGAAGTGTGACGACCACACTAGTTGCCCACGTAGCACCACCTGCTGCCAACAGAGCCCTGGAAAATGGGCCTGCTGTCCCCTACCTCATGCGGTGTGTTGTGAAGATGGAGAACACTGCTGCCCTAGAGGCTACAGATGTGATGTGACTAAAACCTCCTGCATCAAGGAAGGCCAGGAAATACCCTGGTCCAGGAAGCTCAAGGCATCCAGCACCCCCGCCGGTCCCCAAGATGTGAGGTGTGACCCCCAGACAAGCTGTGCCTCCGGGACCACCTGCTGCCAGCTGCCCACGGGCAAGTGGGGCTGCTGCCCTCTGGTCAAGGCGGTGTGCTGCTCGGATCACGAGCACTGCTGCCCGCAAGGTTACAGATGCAACATTGAGGCTGGCACCTGTGAGAAGCAGGGCGAACCCTTCGTGTGGCTGACCCACACTGCCCCCCTGGTTCGTGTCTCTGGACTGGCAGCACAGAGCTCCCAGCTCCAGAGGGATATTAAGTGCAGTGACACCTTCCAGTGCTCTGATGGGGAAACCTGCTGCCAGATTACAGCCCATTCCTGGGCCTGCTGCCCTTTCCCTCAggctgtgtgctgtgctgataAGAGGCACTGCTGCCCTGCGGGCTACACTTGTGATGTGGCTGGAAGAGGCTGTGACAAAGATGGGCATCTGAGCTGGGACGTGTTTCTTGGAGACCAAAGAAGAGCCCTTGACCCTCTGTAA
>TU19089
TCCACAGCGTCTGTGCCCTGGCTGAAGAAGGTGCCCGCTGTGAGCAGGGTCCCCAAAGATGAGAAGTGTGACGACCACACTAGTTGCCCACGTAGCACCACCTGCTGCCAACAGAGCCCTGGAAAATGGGCCTGCTGTCCCCTACCTCATGCGGTGTGTTGTGAAGATGGAGAACACTGCTGCCCTAGAGGCTACAGATGTGATGTGACTAAAACCTCCTGCATCAAGGAAGGCCAGGAAATACCCTGGTCCAGGAAGCTCAAGGCATCCAGCACCCCCGCCGGTCCCCAAGATGTGAGGTGTGACCCCCAGACAAGCTGTGCCTCCGGGACCACCTGCTGCCAGCTGCCCACGGGCAAGTGGGGCTGCTGCCCTCTGGTCAAGGCGGTGTGCTGCTCGGATCACGAGCACTGCTGCCCGCAAGGTTACAGATGCAACATTGAGGCTGGCACCTGTGAGAAGCAGGGCGAACCCTTCGTGTGGCTGACCCACACTGCCCCCCTGGTTCGTGTCTCTGGACTGGCAGCACAGAGCTCCCAGCTCCAGAGGGATATTAAGTGCAGTGACACCTTCCAGTGCTCTGATGGGGAAACCTGCTGCCAGATTACAGCCCATTCCTGGGCCTGCTGCCCTTTCCCTCAggctgtgtgctgtgctgataAGAGGCACTGCTGCCCTGCGGGCTACACTTGTGATGTGGCTGGAAGAGGCTGTGACAAAGATGGGCATCTGAGCTGGGACGTGTTTCTTGGAGACCAAAGAAGAGCCCTTGACCCTCTGTAATGCCCATGCAGACCTGCACTCCAGACCTTCAAAAAAGCAACAGcactaaatgtatttcaagaaaGGAGAGCTGTTCATTTTGTTGACTCATAGGAATGATGccatttaaagaagaaaaatacggaatgacatttaaacaaaagcaaCGTTTAGGGTGCCGTACAGTTTAAGCAGATGCTCTAGATGAAGTTGAAGTTGCCTCTGTGCTTCTACTCATGTGCTGCAGCCTAAAAAATGACATCTTATTTCAGTGATAATGTAACTGCTTTATGTACTCCCCTCCCCCAATATTGACTACTGCATCTATGGAATTACAGTAGCAGAATCACTTGTAAAtccatgattttgtttttcaaacaagCAACATTAGAATCAGTATATTTTCTGTCCCCTCTGTTGGGACTATTTTAAACCCACTCATTCTATGCAAGGTCACCATAACACATAATTAGTGAATAATCTTGAATTACATCTTTCTAGAAAATGCTTAAAGGCATACACAGTGACAGTTATACAGTCCTACTCAAGTATTGTAAAGATTTGCACTCTATTTTATTGCAGATATGGACATATCAGGGCTAGGTAATGATATCTGTGCCTTTGCACTTGAGTTAAGGAATATAAAGATGGGAGGACAGCCTTTTCTCTTGAGGGCACTATTCACATTTCTGCTGACTGGGAAATAAGAATTATACAATCCAGTTTTGTACTGGTTTGGTTAGTTTTAGTCTAGCTAACTGGATAATGGCATTCActtgtattatataatttttatttccccccataAAGATtgtaatacacatacatttgtctAATACTCAATTGATCGGAGAGTATAAAGCTCTGATCCTGTGTAAATTGCACTTTAGTTATAGCACTTCTAGTGTAAAGTTAAATcttgtaataaaaaatgttgcctttttttttcctcctctaaTTGATAGACCGTGAAaggctttttagtttttatgatAAACCTTGTAagaagaatgtgttttaaaatgccattgAACTTCGAAGCACTGAACTCTATTTCCTGCAACTCACTTTGTTTAATGACGTTTACCTGCtctattctttgtattttaaaccaacATTATATCTGAATTGACTACAACTGTTGGGGGTCCCTTTCTGTACAACACGGCTTAGACCAGAGAATTGCGCATGGGAATTCCGATTGTTGGTACCCAAATTTCAAAATAATCAGTGGAGAAATAacatgttgattattattatgagtccCAGGTTCAGACTCCATCTCTCTTGGACCATACCTCTAGAACTACACAGCAGGCCTTCTACACATGCAGTAATCATCACATTTTGGATCCGTGCTAACCTTGAGCGTCTTAAAAATACCTGTCTGAGTTTGTTGGATGTCCAAGATCCGTCTTTGTACAGTAAtggatgattttgttttttcagggaAAATGCGAATTAGCAGTAGGAAATGACTCCCTTCCTTTGAGTCCTTGTTAAACACTATCAGTTTCTGCCCATGTTCACCATGTTCATAACTAgttatctgcaaatatttctccctaatattaaaataattgcaaactCTTTCTTGCAAAACAAGTACAGCGTAGTTCTGGGCATATAATACTAAGAGTATGTGTGggtggtattttattttattgaagctGGTTGATTTAGTTGATTGAGTGTATACCAACTGAATTGAAATAAAGATTTCTACAAATGCTGTTAAACCTGTGTTCTGATT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016731 False 1644 mRNA 0.58 11 28743360 28759460
TU19089 True 2515 lncRNA 0.43 4 28757849 28761192

Neighbor

gene id symbol gene type direction distance location
AMCG00016730 NA coding upstream 24694 28682371 ~ 28718666 (+)
AMCG00016729 NA coding upstream 61859 28664814 ~ 28681501 (+)
AMCG00016728 NA coding upstream 82467 28658932 ~ 28660893 (+)
AMCG00016721 NA coding upstream 397534 28308602 ~ 28345826 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding upstream 456933 28280498 ~ 28286427 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 832 28762024 ~ 28777025 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding downstream 156924 28918116 ~ 28929190 (+)
AMCG00016737 NA coding downstream 238469 28999661 ~ 29014142 (+)
AMCG00016745 cdk5r1,LOC108426451 coding downstream 567337 29328529 ~ 29329440 (+)
AMCG00016746 NA coding downstream 608566 29369758 ~ 29371719 (+)
G15346 NA non-coding upstream 14306 28725487 ~ 28729054 (+)
G15329 NA non-coding upstream 291744 28451304 ~ 28451616 (+)
G15328 NA non-coding upstream 308104 28434984 ~ 28435256 (+)
G15270 NA non-coding upstream 512381 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 582473 28160665 ~ 28160887 (+)
G15417 NA non-coding downstream 203152 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 282525 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 296494 29057686 ~ 29058167 (+)
G15425 NA non-coding downstream 304925 29066117 ~ 29066407 (+)
G15450 NA non-coding downstream 383490 29144682 ~ 29179798 (+)
G15223 NA other upstream 637649 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 744583 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 864663 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 904257 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 909823 27829268 ~ 27833537 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 473312 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1261415 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1311746 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1348407 30109599 ~ 30113284 (+)
G15659 NA other downstream 1475262 30236454 ~ 30236841 (+)

Expression


Co-expression Network