AMCG00016733 (s2540,LOC106601558,LOC108434938)


Basic Information

Item Value
gene id AMCG00016733
gene name s2540,LOC106601558,LOC108434938
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28725609 ~ 28738603 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016733
GCTAAATCCATCCAGGCTGCGTCCAGGGCAGCATGGGAACCCAGTCTTGGGATCCCGGAGCATGAATCTATTTCCCGTTTTAAGGATATGAAGGGTGACAATTACAAAACAGGAATCATCTCCTCTTAGATTGAAGATAGAAAGCTAGAGTCTTATCTGAAGTATACCGAGTGCTGGTGTGTCCCAGCCCCGGTGCCGGTGCTGATGCTGTGATCGTGTCGTGTTCCAGGATGGGGGACAGGACTGGTCTGAGCCCCGCCAGTGGCATCACTCCAGTGCAGCAGATGGTGGCGTCTGGCACTGGTGCCCTTTTCACATCCCTGTTTGTCACACCACTGGACGTAGTCAAGATAAGGCTGCAAGCCCAGAAAACACCGTTCTACCAAGGGAAATGTTTCCTGTATTGTAATGGGCTGATGGACCATGTTTACGTGTGTGAGAATGGTACAAGCTGCACCAGCTGGTACAAAACGCCCACCCACTTCAGAGGGACTCTGGATGCCTTTGTGAAGATCACCCGCAATGAGGGTGTGCGGTCTCTGTGGAGTGGGCTCCCACCTACACTaGTGATGGCCGTGCCGGCTACAGTGATCTACTTCACCTGCTATGACCAGCTGCGGGACTTCCTTCGGTATGGCATGGGTTACCAGGGCAGCCAGGTCCCCCTAGTGGCTGGAGGCCTCGCAAGATTGGGTGCGGTCACGGTCATCAGCCCGCTGGAGTTGGTCCGGACCAAGATGCAGTCCAGGCAGCTGTCGTACGCAGAGCTGAGGGTCTGTATCCAGTCGGCCGTGGCCCAGGATGGCTGGCTGTCTCTCTGGAGGGGCTGGGGACCCACCATACTCAGGGATGTGCCCTTCTCAGctcTTTACTGGTTCAACTATGAACTGGTCAAGGCCCAGCTGTGCCAGGGCTACAGAGTACACGAGGCCACCTTCTCTATGAGCTTCTGCGCAGGGGCCATTTCAGGCGCGGTAGCTGCGGTGATGACCCTGCCGTTCGACGTGGTGAAGACCCGGAGGCAGATCGAGCTGGGCGAGATGGAGACGTTGGCAGTTGTTGCAAAGAAGCCCTCCTCCACCTTAATGATCATGAGAAGGATCTGGGCAGAAGCTGGCTATCGTGGACTCTTTGCAGGTTTTTTGCCACGGGTGATCAAAGTGGCCCCAGCGTGTGCTGTGATGATCAGCACCTATGAGTTTGGAAAGGCCTTCTTCCAGAATCTCAACCGGGAGCGAGAGCTACAGGGACAGTGAGGTGCTGTCCGGCCCCGGCCCTCTGCCCAGAGGACACAGCCACCTGAACTAGATGGTGaaaatgcagcagcagcatcagccCCAGAGGTCCAAATCGTTTAAAAAGGCCCAACAATGGGTGTGAGGCTGGTATGGACAGTACTTGTCACCGTGCCCGCCCCTTGCAAAACTCCCGGGGGGGGGATTTTTCTATGAATCTGCATTTAATTGCCAATGAGGCAAGAGCAAATTAGTCAATCACTGACCAATAAAATGTGATTGACCCCAGGAAGCAAACACCTGTTTTGGCCACCCAGTCCCCCCCTGCACATGCTGCTCTGGGCAGGGCAGCTCCCCCATCCAATTGTATAACAATTAGCCAACCAATCAGTCTAATCAAAATCTGTATTTCCTTTTGCGATCACAGTACAACCCATTCCAAACAGCCAGTACACTGGCATCAGACCCCTATATAGAATCCTACTGCTGACAGTGGATCTTTTGACCTTATGGTTTTTAAACGGTTTGGATCGGACAGTGTCCTGGGTGCCGAATCCCAAACCAAAAAACCCCAAAATGACCCGCGGATCTCAGATCTCCAGAAGCTCTTTTCGTTTAAATGTTTAGCCTTAGCACCAGAAAAATAACGTGCCTTTGTTGTCATCCGGTGCAGTTGTCCGTATTGCACTCGGTTCTAGCTCGGCACATACAATCTGCAGTCCAATTCTGTACAGTGGATCGGAAGCTTAGGGAGAACTCATACCATCGAGCACCACCCCTCATCCACACCTTTGAACTCCTCAACTTGATGTATTAATCCGGGAATGCAGCTACCGCATCCCTTAGAGACTAGAGGGCTAATCCGTCTCGGATATTTGTCATGTGTTTTCTTGTGCTTTAATGTGGACATCTGCTGGATAGTGCCGATCCGTGCCCTACTGAGGTAGGACTGTAGGTTTTCGTTCAATGCGAGTACAGACTCCAGCCTGTCGAATCTCTGTGGCTGGATGTATAATCAAACACCACAAGAGCACTGTAAACCTGAAACGCACATGGTGGTGCGCCTTGCTAACATACAGGAGGCGGCACCAACCTCTTCTCGACCCACCGGCCATGGTGTCAGGGAAAAGAAAATGGGACTCGCGAGATCCTATTCTGAAGGCACAACATACATAATTTTGTGGAATAATCTTCCAATACTGCCCCCCTTCCCTTTCCACCCATAAATGCATGTAATCATTTCTACTGGTGGCTTAAAATGTGCATCCCTGCAAGTGAAGCACCCTGGAAGAGAGAGCCACAGGATCAGTAAACCTGGAATGACTTTCTAAGGCCGTGCATTGGTCTATTAAACCTTCACTTAACTCTATTAAACACTTCACTCCTGCTGCTCCTTAATAAGCACAACGGGTTCACACTGGTGAACGGCAGCATGGGTTCTTTTTGCGTTAAACAGAGGCCTTTAGTACATTTGGAAGGTAAGTTGGCAGGCTTTGATAAAATTCAGAGATCAACACCTTTGAACCCAGTGAAAAATGACCAGACCATTGCAGCGGTGTTCTCCGGCAGTGGTGTAGTTGTAGAACCATACCCACTGTGACACCTACTCTGGGCCCACTTGACGTGGCAGTGAACAGTCTTAAATTACCCCTGTGGATTAACAGTCATTCCTATCTCATGTCATTCTTCTATTTCAGTTTCCAACCTCTTTAAAAGGGATACAAGTTTCTGCTGTAATATTGCAGTGTGTTTTAGAGGGGTGGAAACAGGTTTTAATCAATGTCAAATGTGAACAATATTAGTTTCTGACAGGAGGGGTACAGGCTGTTAGTGAaggcaattgtattttttgttttaagtgtcaGGGCTTGTGTTTAaattgtatactttttttttttttttt

Function

NR:

description
Solute carrier family 25 member 40

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016733 True 3138 mRNA 0.50 11 28725609 28738603

Neighbor

gene id symbol gene type direction distance location
AMCG00016727 NA coding downstream 206861 28509826 ~ 28518748 (-)
AMCG00016726 LOC105890724,LOC107754311,LOC108413653,LOC108261365,LOC107694956 coding downstream 232993 28477514 ~ 28492616 (-)
AMCG00016725 cdc27,LOC106600875 coding downstream 305699 28405721 ~ 28419910 (-)
AMCG00016723 NA coding downstream 337917 28386229 ~ 28387692 (-)
AMCG00016724 NA coding downstream 367829 28350369 ~ 28357780 (-)
AMCG00016736 dlx3,dlx3b coding upstream 210847 28949450 ~ 28953796 (-)
AMCG00016738 NA coding upstream 283024 29021627 ~ 29024518 (-)
AMCG00016741 NA coding upstream 453131 29191734 ~ 29201720 (-)
AMCG00016743 nsf,LOC107601245,LOC108260232,LOC107688085 coding upstream 527156 29265759 ~ 29288483 (-)
AMCG00016742 LOC104926834,LOC100703712,LOC108442534,LOC107688086,LOC107709998,LOC107601249 coding upstream 574785 29313388 ~ 29322785 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 29689 28695698 ~ 28695920 (-)
G15364 NA non-coding downstream 43271 28681838 ~ 28682338 (-)
G15330 NA non-coding downstream 273977 28451398 ~ 28451632 (-)
G15291 NA non-coding downstream 439164 28284362 ~ 28286445 (-)
G15254 NA non-coding downstream 564669 28160687 ~ 28160940 (-)
G15448 NA non-coding upstream 327508 29066111 ~ 29066388 (-)
G15525 NA non-coding upstream 522709 29261312 ~ 29264667 (-)
G15585 NA non-coding upstream 1064292 29802895 ~ 29807133 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding upstream 1300187 30038790 ~ 30041875 (-)
G15675 NA non-coding upstream 1303972 30042575 ~ 30044565 (-)
AMCG00016712 NA other downstream 568409 28130012 ~ 28157200 (-)
G15076 NA other downstream 1296958 27424893 ~ 27428651 (-)
G15067 NA other downstream 1321687 27401676 ~ 27403922 (-)
G15026 NA other downstream 1355470 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 1446275 27265887 ~ 27279334 (-)
AMCG00016732 NA other upstream 42869 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 463269 29201872 ~ 29225587 (-)
G15706 NA other upstream 1462856 30201459 ~ 30202351 (-)
G15787 NA other upstream 1787689 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 2641944 31380547 ~ 31388268 (-)

Expression


Co-expression Network