AMCG00016735 (dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424)


Basic Information

Item Value
gene id AMCG00016735
gene name dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28918116 ~ 28929190 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016735
TTCCTCGGCGCTTCGTTTTTATGGACTCGCCGATCAATGATGACGATGAGTTCGATGTCTGATAGTTTGATTGCTTCTGATCCGTCCAAATCGGCCTTCCTGGAGTTCGGCCACGGGCTCCCCGCTCACCAGCAGCCCTCCCCCGGACTGTCTCACAACCACTACCCCGTCCACGGGCTGCACTCGGGCGGACACGCACAGCACGACGGTCCTTTCTCTCCGACCGCTGCCTCGTATGGGCGCTCGCTGGGATACCCGTACCCGAGCCCGGTGGGCAGCCACCACCCCAGCGCTTACCTCTCCTATCAGCACAACAGCCACAGCAGCACGCTGGGACACACACGGATAGAGGACACAGATCATGAGAAGTCTACAGTAATCGAGAATGGGGAAATCCGACTGAATGGCAAAGGAAAGAAGATACGGAAACCCAGAACCATCTACTCCAGTTTGCAGCTGCAGGCGCTGAACCAGAGATTCCAGCAAACCCAGTACCTCGCCCTGCCAGAGCGGGCCGACTTAGCAGCTAAACTGGGCCTGACGCAGACACAGGTTAAGATATGGTTTCAGAACAAGCGCTCCAAGTACAAGAAGATTATGAAGCATGGCTCCAGCGGACCTGAAGGGGAGCACCTCCACACCACCTCCTCCATCTCGCCGTGCTCGCCCGGCCTGCCGCAGCTCTGGGATGTCTCTATGGCGAATAAAGGCGCGCCGATGCACTCCAGTACCTACATGAACAATTTCGGACACTGGTACCCAACCCACCACCAGGAATCTCTGCCACGGGCTCAAATGATGTGA

Function

symbol description
dlx4b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; sensory organ development; and trigeminal nerve development. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; ectoderm; nervous system; pharyngeal arch; and splanchnocranium. Human ortholog(s) of this gene implicated in orofacial cleft 15. Orthologous to human DLX4 (distal-less homeobox 4).

NR:

description
PREDICTED: homeobox protein Dlx4a-like

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016735 True 804 mRNA 0.57 3 28918116 28929190

Neighbor

gene id symbol gene type direction distance location
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding upstream 141091 28762024 ~ 28777025 (+)
AMCG00016730 NA coding upstream 199450 28682371 ~ 28718666 (+)
AMCG00016729 NA coding upstream 236615 28664814 ~ 28681501 (+)
AMCG00016728 NA coding upstream 257223 28658932 ~ 28660893 (+)
AMCG00016721 NA coding upstream 572290 28308602 ~ 28345826 (+)
AMCG00016737 NA coding downstream 70471 28999661 ~ 29014142 (+)
AMCG00016745 cdk5r1,LOC108426451 coding downstream 399339 29328529 ~ 29329440 (+)
AMCG00016746 NA coding downstream 440568 29369758 ~ 29371719 (+)
AMCG00016747 NA coding downstream 476925 29406115 ~ 29424802 (+)
AMCG00016759 NA coding downstream 728886 29658076 ~ 29662545 (+)
G15346 NA non-coding upstream 189062 28725487 ~ 28729054 (+)
G15329 NA non-coding upstream 466500 28451304 ~ 28451616 (+)
G15328 NA non-coding upstream 482860 28434984 ~ 28435256 (+)
G15270 NA non-coding upstream 687137 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 757229 28160665 ~ 28160887 (+)
G15417 NA non-coding downstream 35154 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 114527 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 128496 29057686 ~ 29058167 (+)
G15425 NA non-coding downstream 136927 29066117 ~ 29066407 (+)
G15450 NA non-coding downstream 215492 29144682 ~ 29179798 (+)
AMCG00016731 NA other upstream 156924 28743360 ~ 28761192 (+)
G15223 NA other upstream 812405 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 919339 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 1039419 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 1079013 27836513 ~ 27839103 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 305314 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1093417 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1143748 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1180409 30109599 ~ 30113284 (+)
G15659 NA other downstream 1307264 30236454 ~ 30236841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01603228_01604932 HOXB1A coding CI01000034 null 1602434 ~ 1605430 (-)