AMCG00016741


Basic Information

Item Value
gene id AMCG00016741
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29191734 ~ 29201720 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016741
GGCTGCTGCACCATGCCAGTCCAAGGGGCAGGAAAGCAAGCCTCTCCTTCTTTCTCGCCAGCTATGCCAAGATCGATCACTTGCAATCATGATATATAAGCTGACTATCGTGGGGTAAAAAATGTGTTGTACCCTGACagacttttttgtgtgtgggaaGAATAAAGTAGGATACCTCTAACGGAAACCACTTATTATAGTAGCAAAGGAAGCCAGGGGGCAGCTGttgtctgttgtttgtttgtttatttgtttttaaaaaccatGTATTGTAAGGTCTGTACACGGTAATATTTACTTACAACTGTAGATGCCCGCCAAGGGACTGAGAAGTATAAAACACGGACCATGTTTAAGAGGCTGACCACGAGCATTGTGAAAGAGCTGGACACTCAGGGGGAACTACAGCCAGCCTGGAGTATCTACGAGAACCACAACCTCGACCTGCTGTATCTCTTGAAAAAGACTGTGTGCCCCAAGTGGGTCATCTTTAAAAAGAGCAAGTTTCAACCCACTGGGGTGAAGCTGGAATCTCTGCTGTGCCATGGGGACACTGTGGATATAGGGAAGAGGCAGGACAGTGTTGCCAGGATGTCGGTGAAGCACCACGGCAGCACAGACCTGAACTCTGCTGTTGCAGGTGGCGGGGTGGAGGCAGAGGCCCAGCTGAACATGGGCCACACCCACACAGTGGGCAACACTGACATGGAGAGGGGGAGGGGCAGTACGAGGCTGACAAAATCACTCCTCATCAAATTTAACGTCAACCACTGGCTGCTGAGGAGCCTGCAGAACTCCAAAGTGACTGGGCTGTATGTGATCTACGAGGTCCTAAGAGCCAAGAACACTATAAACCTGGAGCAAAGAAGAGCGATGGAGGATTTGGCATCTGACACACTTGATTTCCCCGCATTGAAGCGGCAGGTCCAGAAAGAGTTTGCAGAGTTCGAGAACCTGGATAAGTGCGCAAGAAAGGACATCTGGGGTGTGCtgtctaaaataataatgtgtgacCAGGCCCTGACCGCTCTGGATTACATTGGGAACAGAGGCTCGGTCCAGGAGCTGCTGAGGCTTGTGGGACTTGACCCATCTGATGCTCCTGACCCCAACGAGCTCATGGCCCCTTTTAATCTCCTGGTCAATGCGTTCATTGAGCTGGAGGGCACAGCCACGAATTTGATCTGCAGCCTGAACACAGATGATTGCCATAAACAGCTGAAGCTGTTTCCAGAGGACAGTGTTCGCCTGGCAGGGGAGCTGCTGGAGGCCTGCGGACTGCAGCTGAGCGAACAGAGGCTGGACCCCAGCCTGGGGACACCAGGCAGCCCCGACCTCTCCCTGCTCTCCTTTTACATTGCCCTGCAAGGCCTGGACAGGCTACTGGAGCAATGA

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016741 True 1395 mRNA 0.51 10 29191734 29201720

Neighbor

gene id symbol gene type direction distance location
AMCG00016738 NA coding downstream 167216 29021627 ~ 29024518 (-)
AMCG00016736 dlx3,dlx3b coding downstream 237938 28949450 ~ 28953796 (-)
AMCG00016733 s2540,LOC106601558,LOC108434938 coding downstream 453131 28725609 ~ 28738603 (-)
AMCG00016727 NA coding downstream 672986 28509826 ~ 28518748 (-)
AMCG00016726 LOC105890724,LOC107754311,LOC108413653,LOC108261365,LOC107694956 coding downstream 699118 28477514 ~ 28492616 (-)
AMCG00016743 nsf,LOC107601245,LOC108260232,LOC107688085 coding upstream 64039 29265759 ~ 29288483 (-)
AMCG00016742 LOC104926834,LOC100703712,LOC108442534,LOC107688086,LOC107709998,LOC107601249 coding upstream 111668 29313388 ~ 29322785 (-)
AMCG00016744 myo1d,LOC107743773,LOC107677861,LOC106908042 coding upstream 154472 29356192 ~ 29362007 (-)
AMCG00016748 NA coding upstream 170932 29372652 ~ 29405744 (-)
AMCG00016749 rara,LOC100136372,LOC106578316 coding upstream 222876 29424596 ~ 29445568 (-)
G15448 NA non-coding downstream 125346 29066111 ~ 29066388 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 495814 28695698 ~ 28695920 (-)
G15364 NA non-coding downstream 509396 28681838 ~ 28682338 (-)
G15330 NA non-coding downstream 740102 28451398 ~ 28451632 (-)
G15291 NA non-coding downstream 905289 28284362 ~ 28286445 (-)
G15525 NA non-coding upstream 59592 29261312 ~ 29264667 (-)
G15585 NA non-coding upstream 601175 29802895 ~ 29807133 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding upstream 837070 30038790 ~ 30041875 (-)
G15675 NA non-coding upstream 840855 30042575 ~ 30044565 (-)
G15690 NA non-coding upstream 907733 30109453 ~ 30113284 (-)
AMCG00016732 NA other downstream 406227 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1034534 28130012 ~ 28157200 (-)
G15076 NA other downstream 1763083 27424893 ~ 27428651 (-)
G15067 NA other downstream 1787812 27401676 ~ 27403922 (-)
G15026 NA other downstream 1821595 27369590 ~ 27370139 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 152 29201872 ~ 29225587 (-)
G15706 NA other upstream 999739 30201459 ~ 30202351 (-)
G15787 NA other upstream 1324572 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 2178827 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 3059829 32261549 ~ 32267968 (-)

Expression


Co-expression Network