AMCG00016744 (myo1d,LOC107743773,LOC107677861,LOC106908042)


Basic Information

Item Value
gene id AMCG00016744
gene name myo1d,LOC107743773,LOC107677861,LOC106908042
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29356192 ~ 29362007 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016744
ATGCGGTACAAACGGATGCGTGCCACCGTCACCATTATCCGTGCGTACCGGCGCTACAAGGTTAAGTCCTACATCCGTGAAGTTGCCCGCCGCTTCCAGAACGTCCGCAGCATGAAGGATCATGGGAGACATGTCAAGTGGCCCACACCGCCCAAGGTCCTGCGCAAGTTTGAGGAGGCCCTGCAGAATATCCACAAGAGGTGGTGGGCGTGGTCTCTGATCAAGACCCTGCCCCCTGAGGACCTGCCCCAGCTGAGGGCAAAGGCTGCATCCATGGAGTGTCTGAAGGGTCAGAGAGCAGACCTGGGCCTGCAGAGAGCTTGGGAGGGCAACTACCTGAAGCGAGACAGCCCGGAGACGGCCTCCCACTTCACTATGGTGTGCAACGAGCTGCAGCGCAAGGACAAGTTCATGCGGGTCCTCTTCTCTTGTCACGTGCGCAAGATTAACCGCTTCCACAAGGCTCAGGACCGTGCGGTGTTGGTCACTGACCGGCATCTTTATAAGATGGACCCTCTGAAGCAGTACAAGCCCATGAAGAGCATCCCCCTCTACAATGTGACTGGTCTCAGTGTGTCTTCAGGGAAGGATCAGCTGGTGGTGTTCCATACCAAAGATAGCCGGGACCTCATCGTGTGTCTGAAGGGAATGATGCCCGTAGGGGAGAGCCGCATCGGGGAGCTCGTGGGCACTATGGTCAGCCACTTCAAAAGGTACAGCACACGCTGA

Function

symbol description
myo1d Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Is expressed in notochord and tail bud. Orthologous to human MYO1D (myosin ID).

NR:

description
PREDICTED: unconventional myosin-Id

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016744 True 729 mRNA 0.57 5 29356192 29362007

Neighbor

gene id symbol gene type direction distance location
AMCG00016742 LOC104926834,LOC100703712,LOC108442534,LOC107688086,LOC107709998,LOC107601249 coding downstream 33407 29313388 ~ 29322785 (-)
AMCG00016743 nsf,LOC107601245,LOC108260232,LOC107688085 coding downstream 67709 29265759 ~ 29288483 (-)
AMCG00016741 NA coding downstream 154472 29191734 ~ 29201720 (-)
AMCG00016738 NA coding downstream 331674 29021627 ~ 29024518 (-)
AMCG00016736 dlx3,dlx3b coding downstream 402396 28949450 ~ 28953796 (-)
AMCG00016748 NA coding upstream 10645 29372652 ~ 29405744 (-)
AMCG00016749 rara,LOC100136372,LOC106578316 coding upstream 62589 29424596 ~ 29445568 (-)
AMCG00016750 NA coding upstream 148689 29510696 ~ 29513992 (-)
AMCG00016752 NA coding upstream 264877 29626884 ~ 29627432 (-)
AMCG00016751 NA coding upstream 270271 29632278 ~ 29650858 (-)
G15525 NA non-coding downstream 91525 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 289804 29066111 ~ 29066388 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 660272 28695698 ~ 28695920 (-)
G15364 NA non-coding downstream 673854 28681838 ~ 28682338 (-)
G15330 NA non-coding downstream 904560 28451398 ~ 28451632 (-)
G15585 NA non-coding upstream 440888 29802895 ~ 29807133 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding upstream 676783 30038790 ~ 30041875 (-)
G15675 NA non-coding upstream 680568 30042575 ~ 30044565 (-)
G15690 NA non-coding upstream 747446 30109453 ~ 30113284 (-)
G15708 NA non-coding upstream 842815 30204822 ~ 30205115 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 130605 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 570685 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1198992 28130012 ~ 28157200 (-)
G15076 NA other downstream 1927541 27424893 ~ 27428651 (-)
G15067 NA other downstream 1952270 27401676 ~ 27403922 (-)
G15706 NA other upstream 839452 30201459 ~ 30202351 (-)
G15787 NA other upstream 1164285 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 2018540 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2899542 32261549 ~ 32267968 (-)
G16247 NA other upstream 3061051 32423058 ~ 32423438 (-)

Expression


Co-expression Network