AMCG00016766 (arl4d,LOC107552768,LOC106579387,LOC107706901)


Basic Information

Item Value
gene id AMCG00016766
gene name arl4d,LOC107552768,LOC106579387,LOC107706901
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29993530 ~ 29996857 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016766
AGGTGTGGAAGCTGGCATTTGCTGGAGACGGCGCGCCCCCTGTATGAGAACACAGGGACAGGATGCTTTGTGACATGCTCGGgCAAGGTCTTCAGCGATAGCCGGCATCTCTCCAGTCACCCCTACTGTCTGCTGTGGAAAGTGTGGATGCCGTCCCAGACCAAACTGACCCCCTTCTAAGAGGCTACCTGCGCTTTCCTTCCTACCACAATGGGCAACCAGCTGACCGAGATCGCCCCCAACACGCCTTTTCTGCCCAACTTCCAGTCCTTGCACGTTGTGGTCATTGGACTCGACTCTGCGGGTAAAACCTCGCTGCTGTACCGACTCAAACTGAGGGAGTTTGTCAAAACGATACCCACCAAAGGGTTCAACACAGAGAAGATCAAAGTGGCAGTGGGTAGCTCCCGCTCCATCACCTTCCAAGTGTGGGATGTAGGCGGGCAGGATAAGCTGAGGCCGCTGTGGAAGTCGTACACCCGCAGGACGGACGGTATGGTGTTCGTGGTGGACTCCACCGAGGCAGAGCGCATGGAGGAGGCCAAAGTAGAACTGCATAAAATAACCCGCACCTCCGAGAACCAGGGCGTCCCTGTGTTAATACTGGCCAACAAACAGGACTTGCCGGCTGCGCTGTCGGTCACAGAGGTGGAGAAAGTTCTCGCCATGCATGAACTCAGCTCGTCCACCTTGCACCACACTCAAGGCTGCAGCGCTGTGGACGGACAGGGGCTGCAGCCCGGCCTGGAAAAACTTTACGAAATGATCCTGAAGAGAAAGAAGATGCTCAGACACAGCAAAAAGAAGAGATGAAGCAGCTAACCCATTTCCAGGGCATGGCATGCGTGAATGGACCTTTCCTGAACCTGTCTTGATAGGTTCCTTTGAATGGAAGGATTTTGCAGCAGTCCAATAAAGGAACAATTTTATCCCTGACGGCCTTGGCGTCAgtcaaacacaacacatttgtCCTTTATGTGACCCAGTATTGAACCGCTTTCTTCCGTAGCTAGTATTTGCTGTAAGGCAGCCCTTTGTGTCCAAGGAATATGTGATTGCTCTAATAGGCTGTAGCACCAGCAGGATTTAGCCCAGGCATCGATACAGTGTGACAGGAACCCTGTACCCTACCCCAGACCGCTGTATGGGCTCATAGCTTGGCAAGACACTAATTGCACATGGaaacaaggaaggaaaaataaacaaatgaaacagaatatCAGCTAAATTCTTGGCTTTCTGTAAACATTATGCTCAGCAATGTATGGCCATCATGTCAGtgctagtttaaaaaaaaaagagagagcaaTGGCCATGCCAGCCAACtctgaaataattgtttgttctgGTAGTTTGTGGCCGAAACGTCTGAAGTGAATTCCTGTGAGACCACAGAGCTCAAGATGTCATTGTGATAACGGACTGTTTTTACaatctgtacatattttttttgtaatgcttatgaataaataaattattgaagACTTTGACATGAGA

Function

symbol description
arl4d Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL4D (ADP ribosylation factor like GTPase 4D).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 4D

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016766 True 1497 mRNA 0.49 2 29993530 29996857

Neighbor

gene id symbol gene type direction distance location
AMCG00016762 dhx8,LOC107706906 coding downstream 88874 29893213 ~ 29904656 (-)
AMCG00016758 med24 coding downstream 279065 29701416 ~ 29714465 (-)
AMCG00016751 NA coding downstream 342672 29632278 ~ 29650858 (-)
AMCG00016752 NA coding downstream 366098 29626884 ~ 29627432 (-)
AMCG00016750 NA coding downstream 479538 29510696 ~ 29513992 (-)
AMCG00016767 NA coding upstream 11280 30008137 ~ 30013935 (-)
AMCG00016768 NA coding upstream 22658 30019515 ~ 30036042 (-)
AMCG00016765 NA coding upstream 70464 30067321 ~ 30071224 (-)
AMCG00016774 NA coding upstream 91990 30088847 ~ 30099607 (-)
AMCG00016773 NA coding upstream 126994 30123851 ~ 30139691 (-)
G15585 NA non-coding downstream 186397 29802895 ~ 29807133 (-)
G15525 NA non-coding downstream 728863 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 927142 29066111 ~ 29066388 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 1297610 28695698 ~ 28695920 (-)
G15364 NA non-coding downstream 1311192 28681838 ~ 28682338 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding upstream 41933 30038790 ~ 30041875 (-)
G15675 NA non-coding upstream 45718 30042575 ~ 30044565 (-)
G15690 NA non-coding upstream 112596 30109453 ~ 30113284 (-)
G15708 NA non-coding upstream 207965 30204822 ~ 30205115 (-)
G15711 NA non-coding upstream 210830 30207687 ~ 30208537 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 767943 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1208023 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1836330 28130012 ~ 28157200 (-)
G15076 NA other downstream 2564879 27424893 ~ 27428651 (-)
G15067 NA other downstream 2589608 27401676 ~ 27403922 (-)
G15706 NA other upstream 204602 30201459 ~ 30202351 (-)
G15787 NA other upstream 529435 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1383690 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2264692 32261549 ~ 32267968 (-)
G16247 NA other upstream 2426201 32423058 ~ 32423438 (-)

Expression


Co-expression Network