AMCG00016768


Basic Information

Item Value
gene id AMCG00016768
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30019515 ~ 30036042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016768
ATGGACTTCCCTGTGAACCTGAAGGTGAATTTTAAGGGACGGGCGGAGAGTTTCCTAGTTTCGGACTCGGAAAGGACGAGCTGGGAGTCGGTGGAAGACATGgtcaagattttgtttcagttgaGCACAGTGCAAGTGAAATACTTTGACGAGGACAACGAAGAGGTTTCAATCAACAGTCAGGAGGAATACGAAGAAGCTTTGAAGAGTGCAATGAAGCAAGGAAACCAGCTTCACATGAATGTATATGAGGTGAAGGAGGCTGGAAGGAGAGCCTGTGAGAGCACAGCAGTAAACAGAGACTGCACTGTGGTGAAGATCACCGACAGCCCTGCACAGCATGCATCACCTCCAGCTAACCCTGCTGCACAGAGCTTGCAGCCTGCAGCCACAGACGAGGAAATGgtGGTAATAAAAGAATTCCTGGTAGACCAAGAGGATGAACACATCCCCCCAGCATGGTTCACCTCATACATGGCAAAGTTTAAGGACCAAGTGGTGAAGGAGGCTGTGGAGAAGATCTGCCTTGAATTCTCAGAGCGCTTCTGCCTCCAGAAGCAGCAGCAGGTCCCCCCTCCGGAGCCAGCCGGCATGGCCACCCAGGTGCCCGAGATCAGCTCCACGGCCACACACCCAGACGGCCGGCTATCCCCCTGCCAGGCCTGTCTAGGCTGCACCACGGGGGTATACCAATGCAGTGTTTGCCCATCCTACACTTTATGTGAGCTGTGCAGCTTCCAGCATGACCCCAGCCACTCCTTGGTGAAACTCAGGACTGCTGTGCCACTCGGGGAATACGGAGAACCAGTAGTAGTGGAACAAAGGTTTCAGAAGCGGATGGACAGGAGCTTCCGGAAAGCAGAGAAGCAGAGACTGAAGGCAGAGAAGAGGCAGCTGAAGGCCGAAGTCAAGGAGATCAAGAAGCAGCTGAGGATGGAGCGCCGGAGCCTCCAGTGGAGTTCAGCTAGCGACGGGGCCGGCGAGCCCGTGCTGCTGCAGCCCAGAGGGACACCTGCCAGCCAGCCAGAGAGCCCAAAGCAGTCCTGCACTCCCGTGGTGCCCACCATGACGGCTGTGTTCCTGGATGAGAACCTGCCTGACGGTACTCGGCTCCAGCCCGGCACCAGGTTCATCAAGTACTGGAGGATGAGAAACACTGGAACAGTCAGCTGGACCTCAGACACCAAGCTCAAGTTCATGTGGGGGAACCTGGACCTGGCAACCAGTGAGAAGAAGGAGGTGGCCGTGCCATTTCTGCAGCCAGGGCAGGTGGGGGTGGTGTGTGTGGAGTTTGTGGCCCCGGTGTTAGAGGGCACCTACACTTCGCACTGGCGGCTGGCCCACCGGGGGGAGCAGTTTGGACCCAGGGTGTGGTGCAGCATCGTGGTGGACCCCCTCCAATCTGCTGACTACACTGATTTACAACTCACCATGCCCTGCAGCCAATTACAGGCAAGTGGAAAGGAATTCTGCTCTGATGTGGAGCAACCCCACTCATCCCACAAAGAGGACATGTGCTGCTCAGGAATGGGTCTCACACCCCAGGAATCCAAGATCCTGTATGAGGACCGAGATCAGGATTATTACATCCCCTCAGTGGATCTGCTAACTGCACAGGACCTGCTTTCTTTTGAGCTGCTGGACATTAACATAGTGCAGGAACTGGAACGGGTGCCTCACAACACGCCAGTTGGTAAGGGTGGTTGCCTGTACAGAGCTTGTGATTTGGAGGCGCATGTGGTGGTAATGAACAATGATTTcaaattgattatttgtttccttgtttctcCTGCAGACATGACTCCCTGCATGTCCCCTCTGCCCCACGACGGGCCGCTGCTGGAGAAGCCCGGGCTGGGGCTGATTGAGGAGGAGGCCGAGAGCTCGGGGTTGAAAACTCTGCTGGATGTGAGTCCCGGAGGGCAGCAGGAGATGGAGGGAGCGCCCGCCCAGGAGGAAGGAGACGAAGACATCAGTGGGAcccagtttgtgtgtgagaCGGTGATCCGCTCCCTGACCCTGGAGGAGGCCCCTGACCACAAGCCGCTGCGCAGGAGGCCTGGCTCCCAGAAGACTTCCTATCCGGTGCACCAGGACATCTTCTCCTGCGCTGAGAGGTCTGGGGAGCAGCCCAGCGAGAGGAGAGCCCTGCCAGTTGTGGACGTGGAAGTCAAGAGTGTGATGGTGCCGGTCCAGGCAGTGCAGGAAGACCGGCCACAGACAGAGGAGTGCCCCGAGTCCGACAGTGAAAGTATCTGCGTGGAGGCCGGGTCCGAGAGAGGGGGGGACGAGGAGTTGCCGCAGGACGACCGAGATGAGGTGCGCAGCCAGGGCTCCTCCACGTCCTCCGAGGATTACATCATCATCTTGCCGGACTGCTTCGACACCAGCCGCCCACTGGGGGAGTCCATGTACAGCTCGGCCTTGTCCCAGCCTGGTGCCGGGGGGGCTGTGGAGTCGGACCTGGATGCAGAGCAGCTGTGCCTCAGCTCCCCTGAGGAAGAGGACCTGACGCTAGGTCACAGCGTGAACGACATGCTCTGTGCTTCGCAGACACTGGACACTGTGCCCCTCACCCCTGAGGTGGTGCCCACGCCCGCCCAGCTGCAGCTGACATCAGGGACCCCAACACTCAGAGGAGAGGGGCCTGCTCACCACAGAGACCATAATGAGACAGAGCTGGCGGTCGAGGCTCTGCCCTCACCCGAGCTGTACAGGGAGGAAGCAGTTGAAGGCTCCAGTCCTGTGCAGTCGCTACCAGTCAGCCCCTGTGGAAACACCATCTCAAGACAACACAGTAGCCAAGATCTCAGGCCCCATGGCGGTATAGCAGGGGGGCTGGTTAAGGGAGCCCTGTCGGTTGCGGCCTCTGCCTACAAAGCCCTGTTCACTGGACAGCCTGTCCCAGCACAGCCTCCTGTAGACTCTGCCAATCAGCAGGCCACTATGATGGCTGTGCTCCTGGAGATGGGCTTCGGGGACCGGCAGCTCAACCAGCGGCTGCTGAAGAAACACAACTACAACCTGCTCGATGTGGTGAACGAGCTGGTGCAGCTGACTGACAACGACTGGTACTCTGCCCGCTACTGA

Function

GO: NA

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016768 True 3090 mRNA 0.58 20 30019515 30036042

Neighbor

gene id symbol gene type direction distance location
AMCG00016767 NA coding downstream 5580 30008137 ~ 30013935 (-)
AMCG00016766 arl4d,LOC107552768,LOC106579387,LOC107706901 coding downstream 22658 29993530 ~ 29996857 (-)
AMCG00016762 dhx8,LOC107706906 coding downstream 114859 29893213 ~ 29904656 (-)
AMCG00016758 med24 coding downstream 305050 29701416 ~ 29714465 (-)
AMCG00016751 NA coding downstream 368657 29632278 ~ 29650858 (-)
AMCG00016765 NA coding upstream 31279 30067321 ~ 30071224 (-)
AMCG00016774 NA coding upstream 52805 30088847 ~ 30099607 (-)
AMCG00016773 NA coding upstream 87809 30123851 ~ 30139691 (-)
AMCG00016775 NA coding upstream 125751 30161793 ~ 30174288 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 180202 30216244 ~ 30223409 (-)
G15585 NA non-coding downstream 212382 29802895 ~ 29807133 (-)
G15525 NA non-coding downstream 754848 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 953127 29066111 ~ 29066388 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 1323595 28695698 ~ 28695920 (-)
G15364 NA non-coding downstream 1337177 28681838 ~ 28682338 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding upstream 2748 30038790 ~ 30041875 (-)
G15675 NA non-coding upstream 6533 30042575 ~ 30044565 (-)
G15690 NA non-coding upstream 73411 30109453 ~ 30113284 (-)
G15708 NA non-coding upstream 168780 30204822 ~ 30205115 (-)
G15711 NA non-coding upstream 171645 30207687 ~ 30208537 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 793928 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1234008 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1862315 28130012 ~ 28157200 (-)
G15076 NA other downstream 2590864 27424893 ~ 27428651 (-)
G15067 NA other downstream 2615593 27401676 ~ 27403922 (-)
G15706 NA other upstream 165417 30201459 ~ 30202351 (-)
G15787 NA other upstream 490250 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1344505 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2225507 32261549 ~ 32267968 (-)
G16247 NA other upstream 2387016 32423058 ~ 32423438 (-)

Expression


Co-expression Network