AMCG00016769


Basic Information

Item Value
gene id AMCG00016769
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30022607 ~ 30107727 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016769
CCGCTTCCTTCAAGATGGCGTTGCACCTGCTTGTGGATTAGCGACCACAAGAATACAATAGCATAGGACGTGTTGCTATTACTGATATTACTGACACTGTGCATTGAAATTAAACTGTCACTGTAGCCGTCCAGAACATGTCCACGGAGGAGCTGTCAACGTCGGACAGCGAGCCGGTCTTCGCGGGCGGGGAGCGCTGGGCACCGGTGGGAGCCGTCGCCAGCCCCGAGGATGAGGATGCGGCGGCCGGGAAGAGGGACGCGCTTCTGCCGGAGCCCCGGCGCAGCAGCTCGGGGGCGGCGGAGATGGCGACGAGGCTGCGGAAGCTGGAGGAAGAGCAGGACCTGCTGAACTCCTCGCTGCTGGCCCTCACCTCGCACTTCGCCCAGGTGCAGTTCCGCCTCAAGCAGATCGTCGGCGCCCGCAGCGAGGAGAAGGAGAGcctgctgcaggagctggaggagtTCGCCTTCCGCGGCTGCCCGCACGTCCTGGGCTGCCGGGGGGAGGACGCGCAGCTGCTGGAGAACTCCaGCGAGAGGGAGAAGCGGGAACGACTGGAGGCCCAGAGGGAGAAGCAGAAGGAGCTGATTATCCAGCTGAAGACACAGCTGGATGACCTGGAGAGATTCGCATACCAAGAGGGCAGCTATGACTCCCTACCCCAGTCCATGGTcatggagagacagaggGTGATAATTGACGAGCTGATCAAAAAGCTGGATGTGAACCTGAACGAGGATATCGGCAAGCTGTCCCCCGAGGAGCTGCGGCAGAGGGTGGACTCCGCCATCGCACAGATCGTCAACCCGGCGCGGGTCAAGGAGCAGCTGGTGGACCAGCTCAAAACCCAGATCCGGGACCTGGAGATGTTCATCAGCTTCATACAAGatgaAGTGGGAAGCCCTGTCTTGCCTGGGAATGAGCAGAGTCAGCAGGCAGGGGCTGCCACCCACCACACCAGGGGCCCAGCAGGAAACAGGAAAGtggACCCGGAGCAGGCGCGGCAGATGCGGGAGACGGGGCTACACCTGATGCGCCGGGCGCTGGCGGTGCTGCAGATCTTCGCGGTGAGCCAGTTTGGCTGCGCCGCGGGGCAGATGCCACAAGGGCTGTGGCCGCAGAATGAGGCAGGGAAGGAATACGGGCCCTTGTTGCAGCGGCTGGAGGCTTCGGTGGACAAGGTGAGGCAGCAGGCCCTGCGGCGGCAGCCTGTGGAGGAGCATGTGATCAGCTACTGCAGTGCCCCAGCCTGGGGGCCCCGGGACGAGCTGACAGCCGGCGTACGCAAAGAGCTGGCTATGGCGCTGCGAGACCTGCTGGCCCACGGGCTGTACTCCCCCTCCCAGGGGATGAGCTTGGTCCTGGCGCCCATTGCCTGCCTGCTGCCCACCTTCAGCTCCTCCCCGCAGACCCTGCACCCCTGGGAGCTCTTTGTCAAGTACTACAACGCCAAGAATGGTCCAGCCTTCGTGGAGTCGCCCGCCCGCAAGCTCTCGCAGTCCTTTAGCCTGCCAGTGGGGGGCGGCAGAGTCACCATCACCCCCAAACAGTCGCTGCTGTGGGCCATCCACCAGGTGCTGCGTGAGCACGACCCCTTCAAGAGGGGTGCCGACTCGGAGTTCAAAGCGCTGGTGTGCGTGGCCCTCAACGAGCAGCGCCTGGTCTCCTGGCTCAACCTCATCTGCAAGGCGGGCGGCCTGGTGTCGTCCCACTACCAGCCCTGGAGCTACATGGCCCAGACTGGCTTCGAGAGCGCACTACACATCCTCAGCCGCCTCAGCCCCCTCAAGTTCAACCTGCCCGTTGATCTGGCTGTGCGTCAGCTCAAGAATATCAAAGATGCCTTTTGATCCTGGGGTTTGAGGGCTGGGAGGGGATTGTCCCGAATGAGGGTCAGCGATGGCCATCATACAGGACTGCTGTTAGGAACGATTCAGTTTGAGGACCCACGGCATTATAATTACAGCAGGTTACTAATCTTGGACTCAAAAGTGCTTTCATTGTCCAGCCCTGGGTGGGTTGAAACATGCTGACCATTCGTGATGGAGCCTTGTTAGCTAGCCTCTGCTCATCCAGTGCCATTCTGAGGGCACCTTGCTCATGGAGTAGCTCTCAGGTTTGATGTGTTTTCTCCACAGAAGCTTTCACATTCCAATGATGCTGTTGCTCTTTTGTATCTCCATTTTCATGAGAGTTTTTTCAGAAGCTGTTCCTTCTCAAGTCATTTTGCATGCATCCCATCTGAAGCTGACAACCAAATCATGTATAAAGACCTGCAGTAATTCTACCTGGATGCAGAGCCCATCGATCGCTCTACACTGTATTGTATCTCCAACATTTGCATTCATATATATCAAAGAGAAAGCATTGGAATTCTGACACTTTTACCTTATGTAATGGTTACATATCATTAATGATGGATTATTGTTGTAGCACTTCATTAGGTAGCTGCAGTCCAATCCAACACTTTGTAATGTACTGAATTGTATTCCTTGGAAGTCCCTTGACATTCATTGCTAGCAGAACAATTGCCTGGTGTAGCGTGATTAGTTTGACCGATTGTAATATTgcagagagagtcagagaggctattcatattcataatgtACATGctctaacatttattttaaggtttcTGTTTCCAATTGGCAGGCTGAAGAGctaagataaaaataaaatatatatatacaaaatataactgTTTAGAGTCATGCAAAAAATGTCATGTTGCCATTAATTTTTTATGGCATCGCCAGTGATGTACTGACAAGTTTCGGCAATTACTGCCAGAAAATATGGCTAGCAATAGTTTGCCAAGTGTTGAACTTTTTAGAGGTAATGGAGTAATATAGGTCATGCTCACTGGACCCGGTCAGAGTTATGTAGTTGTTTACCCGGGCTTTTCTACAACAATCCTTAAAATCACATCAATTGCCCAAAAAAGGATCACAGCAAGAAACAGTCTCCAGGCCACTGACAAGGTGTGCcagatttgtttatatatttttgcatttgcacGGGCTCCAAAAATAATTTGTGCCCCAGTGTAGAAAACTATGAAGTGTTTTATGAACAGAAAAGGACACTTGCTGGCTCCAAGAGGTAGTACATCAAGGAATACAAACAGATATGGGAtccattgaaagcatgtacatACACAAAAGAATATTGTGCTTCAGAAGGTAGCACAGGATTTAACTTCCTTATCCTTCTGGGTTTGTTCTTCGTAGGCTGTTGAACGTACTTGCTTAACTGACCCCTTTACCATCCAGGTCTTATGCAGTTAtggtttaaatacaaatataactcCATCGAGGAGCATATCTGAGGACCAGATACTGTTCTCTATACTCAGGATACAAGAAAACACTAAAGGGAAACAACTCTGTTTCAGCCAATAACAGGTGCTGCCGTTCAATTATTGAGTAAAGGTGCACAGACAGACAAGCCAAGGGAAAGTTATTGAATATATCCCTAGTCTACAAGACACTGTGGTTCGAGGGGAGTCTTGTGTGTGTTCCTACCGCACTACCATTACTACAATGTCTTGCACTACAAGTCTGAATGTATAACCACACAAATCTATAGGTTAAAATCCACTAGTGCATCTATACACAAGTCATCAGATCGGCACTCTGCTGCTcctattttacagtttttattgttatataacTTTTAAGGCCCATGGAATTTTGAAACCTATAGAGATTAAATTCAGAGCATTTCAGAGCATGGGAGGCATTACATTCTGCGAGGTCTCAGTGCGGCCTTGACAACGCTGTGAGAAGCTGCTTCTTTCTTcattcaaaaaaacaacaacatattttttaatattgaaagtCTTTATATATGCTGCATGTGATTTAAACCGATAATCGAAGAGAAAGGATccttctgattttaaaatgggtaaagagtgaatattttgtatttataaattgtatttatacatatcaAGGTACAGAATTGAATGTAATACTGGTGAATGCTGTATAACACAAATCAAGTTCTGATTTGTAACTGTTCTgactaaataataatagtaataataataataataataataataattaaagtatgaTTTCAGACAGATCATGTAAGCCAGTGAAAACATGCACAGACACTTTAAATTGCAAGTCTTACTTCTCCATTGTGCCCTTGCTCAATACCACCCTTTCTGATTAATGTGGTGTTAAAGAATCGGAAAACTACAATGCTCTGACTCGCAAGTATGCATCTACACGTGCATTGTGGGCTGGCACAGGAAattgactttttattattattattattattatgtctgaTGATTTTTATGTGTGGACCCAAAATCCCTTCCTTTCTCCACACACCTCTTTTAGTCTCTAAAGCTTTTTGGAGCTTTGCTGCTTTTAAGCACCAAATGAACGTCAaactttttaattcattatttttaatgttatttttcaagttATGCAGAACACATTTTGCATTCTGTCATCCAATGGGGAATCTTGAATACATTCTTTGGAATGCAGCAGGAAGTGTTTGAATTCCTGAGTGCTTCTCACAACTTTCACAAACTGGAATGGGAAACTATCACTGTAATGGGTATTCCTGTACTGCAGGTGGAATTCTGTAAGCATTTATAACAAATCAACAGTGATGTTGCCCAATACATACATTGATTCATTCAAGTGAATTGTCTTTTCCTTCCTGCTGCAGTGTGTCGTCAGTCAGTCTTCCTCCCTGAATGTTATTGTGCTGTAGCAGTTCGTTGTCCAGTCCCAAAACAGGGTTTGACATATTGCTCCGCCCGATTATTTCaagttgtgaaatgtatattatttattcttacaGAGAGATGTATAGATCAATCATGTCTGGGAGGATCAGTACTGTGTAAATGTAAGATGTAGCCTATTTGGTTTGAATATCTGTCATTTAAGGTTACTGTCTcaatttactgttaattaaacaCATGATAAATTGTG
>TU19400
attattattattattattattattattattattattattatgtctgaTGATTTTTATGTGTGGACCCAAAATCCCTTCCTTTCTCCACACACCTCTTTTAGTCTCTAAAGCTTTTTGGAGCTTTGCTGCTTTTAAGCACCAAATGAACGTCAaactttttaattcattatttttaatgttatttttcaagttATGCAGAACACATTTTGCATTCTGTCATCCAATGGGGAATCTTGAATACATTCTTTGGAATGCAGCAGGAAGTGTTTGAATTCCTGAGTGCTTCTCACAACTTTCACAAACTGGAATGGGAAACTATCACTGTAATGGGTATTCCTGTACTGCAGGTGGAATTCTGTAAGCATTTATAACAAATCAACAGTGATGTTGCCCAATACATACATTGATTCATTCAAGTGAATTGTCTTTTCCTTCCTGCTGCAGTGTGTCGTCAGTCAGTCTTCCTCCCTGAATGTTATTGTGCTGTAGCAGTTCGTTGTCCAGTCCCAAAACAGGGTTTGACATATTGCTCCGCCCGATTATTTCaagttgtgaaatgtatattatttattcttacaGAGAGATGTATAGATCAATCATGTCTGGGAGGATCAGTACTGTGTAAATGTAAGATGTAGCCTATTTGGTTTGAATATCTGTCATTTAAGGTTACTGTCTcaatttactgttaattaaacaCAT

Function

GO: NA

KEGG:

id description
K24786 RUNDC1; RUN domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016769 True 4973 mRNA 0.47 5 30100541 30107727
TU19400 False 702 lncRNA 0.46 2 30022607 30107716

Neighbor

gene id symbol gene type direction distance location
AMCG00016761 NA coding upstream 133487 29881009 ~ 29889120 (+)
AMCG00016760 LOC107577625 coding upstream 207771 29802874 ~ 29814836 (+)
AMCG00016757 LOC106589308 coding upstream 279356 29738097 ~ 29743251 (+)
AMCG00016753 dusp3,dusp3a,LOC107669488 coding upstream 291241 29717074 ~ 29731366 (+)
AMCG00016755 NA coding upstream 331756 29684343 ~ 29690851 (+)
AMCG00016771 NA coding downstream 10287 30118014 ~ 30123071 (+)
AMCG00016776 NA coding downstream 71097 30178824 ~ 30213115 (+)
AMCG00016778 arf1l,LOC101077609,LOC103369524,LOC100699666,LOC104938681 coding downstream 146809 30254536 ~ 30255713 (+)
AMCG00016781 NA coding downstream 153959 30261686 ~ 30262981 (+)
AMCG00016777 NA coding downstream 159256 30266983 ~ 30278893 (+)
G15605 NA non-coding upstream 2920 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 129113 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 595990 29425900 ~ 29426617 (+)
G15475 NA non-coding upstream 708899 29233750 ~ 29313708 (+)
G15461 NA non-coding upstream 809000 29213230 ~ 29213607 (+)
G15651 NA non-coding downstream 105445 30213172 ~ 30215710 (+)
G15730 NA non-coding downstream 321326 30429053 ~ 30431794 (+)
G15817 NA non-coding downstream 797883 30905610 ~ 30906839 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 898170 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 925342 31033069 ~ 31033321 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 765783 29234504 ~ 29256824 (+)
AMCG00016731 NA other upstream 1261415 28743360 ~ 28761192 (+)
G15223 NA other upstream 1916896 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 2023830 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 2143910 27872663 ~ 27878697 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1872 30109599 ~ 30113284 (+)
G15659 NA other downstream 128727 30236454 ~ 30236841 (+)
G15855 LOC105013322 other downstream 951613 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 1365979 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 1593942 31701669 ~ 31731446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02192462_02226350 RUND1, RUNDC1 coding CI01000069 null 2192438 ~ 2226350 (-)