AMCG00016770 (rpl27,LOC106601555,LOC107551168)


Basic Information

Item Value
gene id AMCG00016770
gene name rpl27,LOC106601555,LOC107551168
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30109599 ~ 30113284 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016770
TGTGAAAGGTCAGCCGAGACCCTTTGCACTTCCTTTACTGAAAGCGGCGGCCATTGAGCAACAGCAGAATGGGCAAGTTTATGAAACCCGGGAAGGTGGTCATGGTTTTGGCTGGGCGCTATGCTGGGCGCAAGGCTGTCATCGTCAAGAATATTGACGACGGCACCTCTGACAGGCCCTACAGCCACGCGCTGGTCTCCGGGATTGACCGCTACCCCCGCAAAGTGACCACCACCATGGGCAAGAAGAAGGTCGCCAAGAGGTCCAAGATCAAGGCCTTCGTCAAGGTCTACAACTACAACCACCTCATGCCCACCAGaTACTCCGTCGATATTCCTCTGGACAAAACCGTCGTCAACAAGGATGTGTTCAGAGACCCTGCTCTGAAGCGCAAAGCCAGACGAGAAGCCAAGGTCAAATTCGAGGAGAGATACAAGACCGGCAAGAACAAATGGTTCTTCCAGAAGCTTCGGTTCTAAACTTGCATcgatatttcaataataaatgtataaagccCAAGCCTGGCCTCTTGTCTGATTATGGAAACTGCATTGCACTGCCCCACTTCATGATCTGAACAGGGAGAGTTCTGGTTCCAGAGTGCTGCAGAAGCTGCTGTGAGTCAGCCCGACCATTTTCTTGTGTTCGTTGGAAcgaaaggcactatatatagTAACTGTTGGGTATTTACAGGACAATTGCATGAGGTTCCACAACAATTTATGCtgaatgaaattaaactttcaaaaatgtattgaaattgtgGATAGGTTTCCTAAAAGCAAAACCGACCATAAGAATTGGTTAAATACTAATGTGCTGTTAAATAGAAAATTGGCTTCCTGACTCATGTGctttcacttcacttcagatTCTCAACTTTCACTAATTATTAGTTCCTATTTTTAATATAACCGAAGTGAAGCTAAATGGATCTGGTTCTCTACACTTCATTCCTGTGGAAGGGGCATCATCAGTCTGAATGCACTTCAGAAGCTTGTGTGGTTTGATTTGACTCTGGTTTTGAAGAATGATTTCTTTATTCGTGTGGGGGGGGAAAATGTATATGCAAGGCTAATGTTGCatgtcagtaaaataaaataatacattaagtgtttttaatttgaaaatgtcataAATGCTATAACGAATCCGTTCGAAGTGGGGAATCTGCCGGTTTGGACCCTTGCGGGTAGGGGAGGTCGTGACCTGCTGGAGGAAGGCCCTGTGTCTGACTAACTGAGGAGGCCTGGAATTCCCACTCTTCAATGGGctccaaaataaaattaaaacataaacctCA
>TU19434
CTGTAGTTGGTGTGAAAGGTCAGCCGAGACCCTTTGCACTTCCTTTACTGAAAGCGGCGGCCATTGAGCAACAGCAGAATGGGCAAGTTTATGAAACCCGGGAAGGTGGTCATGGTTTTGGCTGGGCGCTATGCTGGGCGCAAGGCTGTCATCGTCAAGAATATTGACGACGGCACCTCTGACAGGCCCTACAGCCACGCGCTGGTCTCCGGGATTGACCGCTACCCCCGCAAAGTGACCACCACCATGGGCAAGAAGAAGGTCGCCAAGAGGTCCAAGATCAAGGCCTTCGTCAAGGTCTACAACTACAACCACCTCATGCCCACCAGaTACTCCGTCGATATTCCTCTGGACAAAACCGTCGTCAACAAGGATGTGTTCAGAGACCCTGCTCTGAAGCGCAAAGCCAGACGAGAAGCCAAGGTCAAATTCGAGGAGAGATACAAGACCGGCAAGAACAAATGGTTCTTCCAGAAGCTTCGGTTCTAAACTTGCATcgatatttcaataataaatgtataaagccCAAGCCTGGCCTCTTGTCTGATTATGGAAACTGCATTGCACTGCCCCACTTCATGATCTGAACAGGGAGAGTTCTGGTTCCAGAGTGCTGCAGAAGCTGCTGTGAGTCAGCCCGACCATTTTCTTGTGTTCGTTGGAAcgaaaggcactatatatagTAACTGTTGGGTATTTACAGGACAATTGCATGAGGTTCCACAACAATTTATGCtgaatgaaattaaactttcaaaaatgtattgaaattgtgGATAGGTTTCCTAAAAGCAAAACCGACCATAAGAATTGGTTAAATACTAATGTGCTGTTAAATAGAAAATTGGCTTCCTGACTCATGTGctttcacttcacttcagatTCTCAACTTTCACTAATTATTAGTTCCTATTTTTAATATAACCGAAGTGAAGCTAAATGGATCTGGTTCTCTACACTTCATTCCTGTGGAAGGGGCATCATCAGTCTGAATGCACTTCAGAAGCTTGTGTGGTTTGATTTGACTCTGGTTTTGAAGAATGATTTCTTTATTCGTGTGGGGGGGGAAAATGTATATGCAAGGCTAATGTTGCatgtcagtaaaataaaataatacattaagtgtttttaatttgaaaatgtcataAATGCTATAACGAATCCGTTCGAAGTGGGGAATCTGCCGGTTTGGACCCTTGCGGGTAGGGGAGGTCGTGACCTGCTGGAGGAAGGCCCTGTGTCTGACTAACTGAGGAGGCCTGGAATTCCCACTCTTCAATGGGctccaaaataaaattaaaacataaacctCA

Function

symbol description
rpl27 Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27).

NR:

description
PREDICTED: 60S ribosomal protein L27

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016770 False 1303 mRNA 0.45 5 30109609 30113284
TU19434 True 1313 TUCP 0.45 5 30109599 30113284

Neighbor

gene id symbol gene type direction distance location
AMCG00016764 NA coding upstream 50317 30054798 ~ 30059282 (+)
AMCG00016763 psme3 coding upstream 63296 30036255 ~ 30046303 (+)
AMCG00016761 NA coding upstream 220479 29881009 ~ 29889120 (+)
AMCG00016760 LOC107577625 coding upstream 294763 29802874 ~ 29814836 (+)
AMCG00016757 LOC106589308 coding upstream 366348 29738097 ~ 29743251 (+)
AMCG00016771 NA coding downstream 4730 30118014 ~ 30123071 (+)
AMCG00016776 NA coding downstream 65540 30178824 ~ 30213115 (+)
AMCG00016778 arf1l,LOC101077609,LOC103369524,LOC100699666,LOC104938681 coding downstream 141252 30254536 ~ 30255713 (+)
AMCG00016781 NA coding downstream 148402 30261686 ~ 30262981 (+)
AMCG00016777 NA coding downstream 153699 30266983 ~ 30278893 (+)
G15605 NA non-coding upstream 89912 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 216105 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 682982 29425900 ~ 29426617 (+)
G15475 NA non-coding upstream 795891 29233750 ~ 29313708 (+)
G15461 NA non-coding upstream 895992 29213230 ~ 29213607 (+)
G15651 NA non-coding downstream 99888 30213172 ~ 30215710 (+)
G15730 NA non-coding downstream 315769 30429053 ~ 30431794 (+)
G15817 NA non-coding downstream 792326 30905610 ~ 30906839 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 892613 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 919785 31033069 ~ 31033321 (+)
AMCG00016769 NA other upstream 1872 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 26071 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 852775 29234504 ~ 29256824 (+)
AMCG00016731 NA other upstream 1348407 28743360 ~ 28761192 (+)
G15223 NA other upstream 2003888 28104737 ~ 28105711 (+)
G15659 NA other downstream 123170 30236454 ~ 30236841 (+)
G15855 LOC105013322 other downstream 946056 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 1360422 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 1588385 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 1615272 31728556 ~ 31751113 (+)

Expression


Co-expression Network