AMCG00016772 (g6pc)


Basic Information

Item Value
gene id AMCG00016772
gene name g6pc
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30072938 ~ 30083528 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016772
ATGGAAGCAGTGCACGGGTATGGGGTGAGCACGGTGGAGTACCTCCAGACTCACTACAGAGGCGCTCAGAGCTGGTTCCTCTTCATCTCCTTCGCTGCCGACCTCAGGAACACCTTCTTTGTCTTCTTCCCCATCTGGTTCCACCTGCGCGAGTCAGTGGGCATCAAGCTCATTTGGACAGCCGTGATCGGGGACTGGCTCAACCTGGTCTTCAAGTGGATCCTGTTTGGAGAGAGACCGTATTGGTGGGTCCATGAGACATCCTACTACAGTAACTCATCTGTGCCACATATTGAGCAGTTCCCAGTTACCTGTGAGACCGGCCCAGGAAGTCCATCTGGTCACGCTATGGGAGCTGCAGGAGTGTACTATGTCATGGTGACTTCCATTCTCAGCATcttgttaaagaaaaaacagaccaGCGGTGTGACAAACTGGTGTGTGCGTGGAGCACTGTGGGCAGTGTTCTGGGGTGTCCAGGTCTGCGTCTGTCTCTCCAGGGTCTTCCTGGCCGCCCACTTCCCACACCAGGTCATCGCAGGGGTCATCACAGGGGAGGATACTACTGTGAAGTGCTGTTTTAAGAGCACCGAGAGCCTTGATATGGAGGCAGGCATGGATGCAGTGCATGGGTACGGGGTGAGCACGGTGGAGTACCTCCAGACTCACTACAGAGGCGCCCAGAGCTGGTTCCTCTTCATCTCCTTCGCCGCCGACCTCAGGAACACCTTCTTTGTCTTCTTTCCCGTCTGGTTCCACCTGTGCGAGTCAGTGGGCATCAAGCTCGTCTGGACAGCCGTGATCGGGGACTGGCTCAACCTGGTCTTCAAGTGGATCCTGTTTGGAGAGAGACCGTACTGGTGGGTCCACGAGACGTCCTTCTACAGTAACTCATCGGTGCCACACATTGAGCAGTTCCCAGTTACCTGTGAAACCGGCCCAGGAAGTCCTTCAGGTCACGCCATGGGGTCTGCTGGAGTGTATTATGTGATGGTCACATCACTCCTGGCCATTCTGATAAAGAAACAAGGGCATTCTGGGAAAAACTGgGTTTTCCTGGCCGCCCACTTCCCACACCAGGTCATCGCAGGGGTCATCACAGGTCAGTGA
>TU19419
CGGGTACAGCACTGCTGCAGGACGCACCAGCGAGGGCTGTGGAtcgagagacagacagagggctACCTAGCAGCACCGAGAATCTAGAGATGGAGGCAGGCATGGAAGCAGTGCACGGGTATGGGGTGAGCACGGTGGAGTACCTCCAGACTCACTACAGAGGCGCTCAGAGCTGGTTCCTCTTCATCTCCTTCGCTGCCGACCTCAGGAACACCTTCTTTGTCTTCTTCCCCATCTGGTTCCACCTGCGCGAGTCAGTGGGCATCAAGCTCATTTGGACAGCCGTGATCGGGGACTGGCTCAACCTGGTCTTCAAGTGGATCCTGTTTGGAGAGAGACCGTATTGGTGGGTCCATGAGACATCCTACTACAGTAACTCATCTGTGCCACATATTGAGCAGTTCCCAGTTACCTGTGAGACCGGCCCAGGAAGTCCATCTGGTCACGCTATGGGAGCTGCAGGAGTGTACTATGTCATGGTGACTTCCATTCTCAGCATcttgttaaagaaaaaacagaccaGCGGTGTGACAAACTGGTGTGTGCGTGGAGCACTGTGGGCAGTGTTCTGGGGTGTCCAGGTCTGCGTCTGTCTCTCCAGGGTCTTCCTGGCCGCCCACTTCCCACACCAGGTCATCGCAGGGGTCATCACAGGCATGATTGTGGCTGAGGCCTNNN
>TU19422
ATCAGACCCTGGAGTGGCCTGACCGTTAAGCAGCATGGGTATATAAAgaggcagcagtgtgtgtacagGCAATCGGAAAAGCACTTGATCACACGCGCACTGAAGCTCCTGCGCACTTGTCAGAAACTGAAGTGACAGAACAGCGGCAAGAACTCAAGAGACACAGGGCGGCACTGAGTCAACACGCAGACACTGAGGACTGTTCAGGGCAGACGGCTACCGAGCAGCACCGAGAGCCTTGATATGGAGGCAGGCATGGATGCAGTGCATGGGTACGGGGTGAGCACGGTGGAGTACCTCCAGACTCACTACAGAGGCGCCCAGAGCTGGTTCCTCTTCATCTCCTTCGCCGCCGACCTCAGGAACACCTTCTTTGTCTTCTTTCCCGTCTGGTTCCACCTGTGCGAGTCAGTGGGCATCAAGCTCGTCTGGACAGCCGTGATCGGGGACTGGCTCAACCTGGTCTTCAAGTGGATCCTGTTTGGAGAGAGACCGTACTGGTGGGTCCACGAGACGTCCTTCTACAGTAACTCATCGGTGCCACACATTGAGCAGTTCCCAGTTACCTGTGAAACCGGCCCAGGAAGTCCTTCAGGTCACGCCATGGGGTCTGCTGGAGTGTATTATGTGATGGTCACATCACTCCTGGCCATTCTGATAAAGAAACAAGGGCATTCTGGGAAAAACTGGTGTGTGCGTGGAGCACTGTGGGCAGTGTTCTGGGGTGTCcaggtctgtgtctgtctctccaggGTTTTCCTGGCCGCCCACTTCCCACACCAGGTCATCGCAGGGGTCATCACAGGCATGATTGTGGCTGAGGCCTNNN

Function

symbol description
g6pc Enables glucose-6-phosphatase activity and phosphotransferase activity, alcohol group as acceptor. Acts upstream of or within several processes, including cholesterol homeostasis; glucose-6-phosphate transport; and glycogen catabolic process. Located in endoplasmic reticulum. Is expressed in liver; metanephros; and small intestine. Used to study glycogen storage disease I. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and type 2 diabetes mellitus. Orthologous to human G6PC1 (glucose-6-phosphatase catalytic subunit 1).

NR:

description
glucose-6-phosphatase

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004346 glucose-6-phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016772 True 1110 mRNA 0.55 9 30073039 30083345
TU19419 False 678 TUCP 0.56 5 30072938 30074896
TU19422 False 829 TUCP 0.56 5 30081254 30083528

Neighbor

gene id symbol gene type direction distance location
AMCG00016764 NA coding upstream 13656 30054798 ~ 30059282 (+)
AMCG00016763 psme3 coding upstream 26635 30036255 ~ 30046303 (+)
AMCG00016761 NA coding upstream 183818 29881009 ~ 29889120 (+)
AMCG00016760 LOC107577625 coding upstream 258102 29802874 ~ 29814836 (+)
AMCG00016757 LOC106589308 coding upstream 329687 29738097 ~ 29743251 (+)
AMCG00016771 NA coding downstream 34486 30118014 ~ 30123071 (+)
AMCG00016776 NA coding downstream 95296 30178824 ~ 30213115 (+)
AMCG00016778 arf1l,LOC101077609,LOC103369524,LOC100699666,LOC104938681 coding downstream 171008 30254536 ~ 30255713 (+)
AMCG00016781 NA coding downstream 178158 30261686 ~ 30262981 (+)
AMCG00016777 NA coding downstream 183455 30266983 ~ 30278893 (+)
G15605 NA non-coding upstream 53251 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 179444 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 646321 29425900 ~ 29426617 (+)
G15475 NA non-coding upstream 759230 29233750 ~ 29313708 (+)
G15461 NA non-coding upstream 859331 29213230 ~ 29213607 (+)
G15651 NA non-coding downstream 129644 30213172 ~ 30215710 (+)
G15730 NA non-coding downstream 345525 30429053 ~ 30431794 (+)
G15817 NA non-coding downstream 822082 30905610 ~ 30906839 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 922369 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 949541 31033069 ~ 31033321 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 816114 29234504 ~ 29256824 (+)
AMCG00016731 NA other upstream 1311746 28743360 ~ 28761192 (+)
G15223 NA other upstream 1967227 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 2074161 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 2194241 27872663 ~ 27878697 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 26071 30109599 ~ 30113284 (+)
G15659 NA other downstream 152926 30236454 ~ 30236841 (+)
G15855 LOC105013322 other downstream 975812 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 1390178 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 1618141 31701669 ~ 31731446 (+)

Expression


Co-expression Network