AMCG00016774


Basic Information

Item Value
gene id AMCG00016774
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30088847 ~ 30099607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016774
TTGCCTTGTGCTCCTCTGATGTTCGACACACAGGGTTAAAAGGGGGACAACAGCTGATAGCAGTAGGAGAACTACCTAAAAATAGCCAGGCGACTGCAAGCAGATACATAGTGTGGAGTTGAACAGACCACAGATCTGCAGAGTCCATTACTCAGTAAGACACTATAAAGGGGAAGACGCTTTCAGCTTTGAGAGGTTTCCACAGCATTGAGatctattttttgttgtttttgtttttttgtggttggaTTTAGTCTCCATCTATCAGAAATGCCCAAGATCCCTCGACCAGAGAATAGTCAACCAGCAAAAGCACTGTGGTTTGATCGATCGAAATATGCCTATATAAACTTCATTGTGGAAGACAGCAAGGACGTCCAAGTTGATATTCAGGAGAACAAAATGATTTTCAGCTGTAAATCAGCGGATGACACCAACGTCTACAATGAGATTTACTTCTACGACAAAGTGGAGCCCAAAGACTCCAGAGAAAGGCGCTATGATCGCACCATCAACGTGATGCTGAGGAAATTAAAGGATAAAGTTGCGTGGCCACGCTTAACGAAAGACACGGgcaagCCGTGTTGGTTGGCCGTGGACTTTGATAACTGGAGAgactgggagaaggaggaggaggatggcaTGGCCGAATACGAGAGATATGTTGATATGCTACAAGATATGAAAAAGGGAGGAGCACAACCAGCAATGGATGACCTGGATGATTTGGATTTCGATACTGTTGTGGTGTCATGCTGTCCTGCAGAACTTAAACTGGAGAACAATGGGAAGAAGGAGAAGATTAAGGGGTTCAATGTCACCCTGCAAGACACCATTCTGTTCCCCGAGGGAGGCGGGCAGGTGCCAGTCTTGCGCGTTACCCGGGAGGGGGCCGAGGCTGTGCATTTCGTGGAATCTGCGCTGGAGGTGGGCTCTGCTGTGCCGCTGCGGGTGGACTGGGAGAGGAGGTTTGACCACATGCAGCAGCACTCGGAGATGGAGGAGCTGGAGGCAGTGGTGAACGAGAAGATCAGAGCCCACATCCCGGTCACTGTGCAGCTGCTGTCAGCGGACGACCCCACTGTGGAGAAGGTCAGGAGTCGTGGCCTGCCAGACGACCACGCGGGGCCCATTCGAATTGTCGACATTAAAGGGATCGACGCCAACATGTGCTGTGGGACTCACGTGTCCAACCTCAGCCACCTGCAGATGATTAAGATCCTTGGgacagaaaagggaaagaaaaataaaaccaacctGATTTTCCTGGCAGGGCGCAGGGTTCTGAAGTTTGTGGAGAGAAGCTTCAGCACTGAACGAGCCCTGACGTCCCTGCTAAAaacGGGACCAGAGGAGCACGTAGAAGCCGTGGACAAGCTGCAGAAGTCAGTCAAGTTGCTGCAGAAAAACTTCAAGAATAACCCAAACCGCGGCAAAGTCTTCTCCTTACACAGGAAGGATGGAGACAATGAGTTCATGAACATTATTGCTAATGAAATTGGCACTGAGGACACTGTGGCGTTCCTGACAGTGGGGGAGGAGAAGGGGGCAGGTCTGTTCTTGCTGGCTGGCCCAGTGGAGACAGTGGATACTCTGGGGCCCAGGGTGGTGGATCTGCTGGAAGGGAAGGGGGCGGGCAAGAAGGGGCGCTACCAGGGCAAGGCTGGCCGCCTGGCACGAAGGGGGGAGGTGGAGGCTCTGTTGCAGCAGCACACCCGGCTCCACAGCTCAGAGGAGGAGTGA

Function

GO:

id name namespace
GO:0043039 tRNA aminoacylation biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K07050 AARSD1, ALAX; misacylated tRNA(Ala) deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016774 True 1743 mRNA 0.52 16 30088847 30099607

Neighbor

gene id symbol gene type direction distance location
AMCG00016765 NA coding downstream 17623 30067321 ~ 30071224 (-)
AMCG00016768 NA coding downstream 52805 30019515 ~ 30036042 (-)
AMCG00016767 NA coding downstream 74912 30008137 ~ 30013935 (-)
AMCG00016766 arl4d,LOC107552768,LOC106579387,LOC107706901 coding downstream 91990 29993530 ~ 29996857 (-)
AMCG00016762 dhx8,LOC107706906 coding downstream 184191 29893213 ~ 29904656 (-)
AMCG00016773 NA coding upstream 24244 30123851 ~ 30139691 (-)
AMCG00016775 NA coding upstream 62186 30161793 ~ 30174288 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 116637 30216244 ~ 30223409 (-)
AMCG00016780 NA coding upstream 137367 30236974 ~ 30241569 (-)
AMCG00016794 NA coding upstream 365550 30465157 ~ 30467804 (-)
G15675 NA non-coding downstream 44282 30042575 ~ 30044565 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding downstream 46972 30038790 ~ 30041875 (-)
G15585 NA non-coding downstream 281714 29802895 ~ 29807133 (-)
G15525 NA non-coding downstream 824180 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 1022459 29066111 ~ 29066388 (-)
G15690 NA non-coding upstream 9846 30109453 ~ 30113284 (-)
G15708 NA non-coding upstream 105215 30204822 ~ 30205115 (-)
G15711 NA non-coding upstream 108080 30207687 ~ 30208537 (-)
G15716 NA non-coding upstream 133941 30233548 ~ 30236867 (-)
G15746 NA non-coding upstream 330322 30429929 ~ 30431998 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 863260 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1303340 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1931647 28130012 ~ 28157200 (-)
G15076 NA other downstream 2660196 27424893 ~ 27428651 (-)
G15067 NA other downstream 2684925 27401676 ~ 27403922 (-)
G15706 NA other upstream 101852 30201459 ~ 30202351 (-)
G15787 NA other upstream 426685 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1280940 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2161942 32261549 ~ 32267968 (-)
G16247 NA other upstream 2323451 32423058 ~ 32423438 (-)

Expression


Co-expression Network