AMCG00016779 (gosr2,LOC107654523,LOC107721531,LOC107674598)


Basic Information

Item Value
gene id AMCG00016779
gene name gosr2,LOC107654523,LOC107721531,LOC107674598
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30216244 ~ 30223409 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016779
gttgtgTTCATCGGTGATTTACTTACACCTGTGTTTAAGAGAAACGTTGATGGCTATGAGCACCAAGAAAGCTATGATTTAAAAAAGCGTTGCTCTTCATAGCattataaacacaattattacataATAAGACGCTGCCGGCTGTATCGCACTATTCCGCTGCATTTgtggtgttttaattaaaccaggTTCATGTCCCTCACCAAAATTGAGCGAACAGCCGGCCTCTTCGCCAAGCCACTGTGCTTTTCAAACAGGCACATTGACGGACGCCTAACTCGTGGGGTGATACAGCTGTAACATCCTGTCGATTGAATAGAAACAGAAACTTATCGATAGGAGGAAGTAATTGCAGCTCTATCGCTTGGTATTTCTGACGACACCATTACAGTGGTTTTCAGCTGTTTACTTGCAATCTGAGAAAATGGAGACACTGTACCACCAGACGAATAAACAGATCCAAGAGGTGCAGTCCAAAATGCGGAACCTGGAGACCTCCGAGCGCCAGTATGTTCACTTGGTGGAGAATGATCTGCAGGCACAGATTGACCAGATCTTCAGTCAGCTGGAGCGCCTGGAGATCCTGGCCGGCAAGGAGCCACCGAACAGACGGCAGAACGCCAAGCTGAGGGTAGACCAGCTGAAGTACGATGTCCAGCATCTGCAAACAGCCCTGCGAAACTCCCAGCACCGCCGCTACAACCGAGAGGCCgaggagagagagcgggaggaGCTCATGTCACGCACCTTCACCACCAATGATGCGGACACCTCCATCCCCATTGACGAGACGCTGCAGTTCAATTCGTCCCTGCACAGCGCACACCGGGGCATGGACGATCTCCTGGGCAGTGGCAGCAACATCCTGCATGGCTTGCGGGACCAGAGGAGCACACTCAAGGGCACCCACAAGAAGATGCTGGATGTGGCAAACATGCTGGGGTTGTCCAACACTGTGATGAGGCTCATCGAGAAAAGGGCTTTCCAGGATAAGTTCATCATGATGGGCGGTATGCTGGTCACGTGTGTGGTCATGGTCCTGGTGGTGAAATACCTCAGCTGAGACCTGCTCCCGTGGGCCTCCGGTTTCCAGCGCTCAATTTCTCAGTGATTTCACACAATGCCACATCACATCAACCACACAAAATCAACACAAGTTTACCCCTCCAGGGACCTGAGATCTGTGCCCCCTCCACCCCTCTTCCTTTCGTTCCAGTTCTTCTGAGCCGTTTTCCTTCAGTACCCGCCTCCCGGAGCAGCTGGTAAACGAACCCCTCCAGTTAAGTTTGCTGGTGTTGTAGTCAAGCAGGGGAGACCCGTGACAAACTCCAGTAACACACTTCACCCAGGCTTACCTCTCCTAGGACAGGATGGAggggtttgtatttttatgggGGTCAGAAGAAGGGGAACATGGGAGCACACATGGCCCCAAAATATTGCCCCGTCTTAAGCAGGTACCCTGGTTTGACTCCCCTCAGTGCTTCACTCTCGTTAAGATTTAAAGACCAATCGTGGCAGCTGACAGTTCACTGACTTCTGGACAATAGAGCAGAGAAAACTGTGGACAATCTTCATTGTGGAAGAGTGACTGAAGGTGAACTGTGGACATTTGAAGTATCTGACCGAGCAGTGGATCCTGTCAGCccactttcctttcctttcctcctCTGTTCTCTGCCTGCTGTAATTAATTGTAGAGCTGTAATTTCTCACTTTGTAGCATTTAGGTGGTTCCTGGTATTAGTTTCTATCTCATTAGATGTGGTTGTCTGTTTTTGGAGGGATTTACAGTTGTCTGCAGAGCTCCTGTGCCTTTGTGAGCTTGTGATTTAAGATGGCCTCTCAAAGCTGGTGGGGCTGGGCTGTACAGGGTAAGTAAAGGTGTTGAAAGCCCATTGGTGAAACAAGTTGATCCACACCCAGAGTATTGCTTAGATTGATTGggattattaatattgtaatagCACATTAATGACATGACGTTACCCTAAATATTTTAGCAAGACGTATTTTAGAGAAGAGCAGGATGACTAGCAATATAAAATCAGTCCTGCCTGCTCTCACTAACAAGATTTCCTGAGCAGTGTCTACATGGAACCGCAGTGAAATCCTGAACACACGGTAAGatatagattaataaaatacagtatacatagtaagttaataagtaaataatgtgCATTATTGATTTAACTTGTTATCTTCGACACGGAAAACTGCATTTAGTGGATGCTGAACTATTGTCATGTTAGGTGTGCTAAGTGAAAGAGTCGAGGTCTATATATCAGTACTCTGCCACTGTGAGGAGTTCTGggtttgattgtttttggtATTTCCCATAATTCTGTAAcatgcagaaagaaaaacagaattcgTCCTGCCCTTCCATCTGTTCGTCTGCATGCGTGCCCCCCGTGGCTCCAGGGGAAATGGAAAGCCACTGGCTGTAGAAAATAGTGTAGAAGAAATCAGGGGTGGACGGGGGGGAAGGGTGGACTGAGCCTGCCTTCCAGTTACTGTGCTGCTTGCATTAGTTCCTTCACTCCTTCCAGAATATTTGGTGGGTTCCCCAACCCCCCGCCTAGAATAAAGACATTGATACTGTATGTGGAAATGTTAAACAATTTGAGCCTTCCCTTCCACAGTCCCCCAGGCACATAGCAGGGAACTGGACCATCGACCAAACTCTTGTGTTAGAAAGGGTGGGGCTCCAGTGAGAGGTCtaacaataaaatgcattcagagATGGCTTGTGCTGGTTACCTTCTTTATGAAACAGCGGTATACACAGATTCTTCACACTGTACCCAGTCTCTCAGGCCTCTTTAAGTGCAGGAAATGAAGTGGATTTGTGTGCATGAATGTCAGTTAaaggcctttttgttttttcctcctaaAAGCaagcaaggaaaaaaacaaatgtctgaatGTTACTGTTGTCCAGGA

Function

symbol description
gosr2 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intra-Golgi vesicle-mediated transport and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 6. Orthologous to human GOSR2 (golgi SNAP receptor complex member 2).

NR:

description
Golgi SNAP receptor complex member 2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005795 Golgi stack cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K08496 GOSR2, BOS1; golgi SNAP receptor complex member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016779 True 2949 mRNA 0.47 6 30216244 30223409

Neighbor

gene id symbol gene type direction distance location
AMCG00016775 NA coding downstream 41956 30161793 ~ 30174288 (-)
AMCG00016773 NA coding downstream 76553 30123851 ~ 30139691 (-)
AMCG00016774 NA coding downstream 116637 30088847 ~ 30099607 (-)
AMCG00016765 NA coding downstream 145020 30067321 ~ 30071224 (-)
AMCG00016768 NA coding downstream 180202 30019515 ~ 30036042 (-)
AMCG00016780 NA coding upstream 13565 30236974 ~ 30241569 (-)
AMCG00016794 NA coding upstream 241748 30465157 ~ 30467804 (-)
AMCG00016792 NA coding upstream 327719 30551128 ~ 30557792 (-)
AMCG00016793 NA coding upstream 334847 30558256 ~ 30563594 (-)
AMCG00016801 psmc5,LOC107753303,LOC107745657,LOC106579096 coding upstream 779697 31003106 ~ 31008426 (-)
G15711 NA non-coding downstream 7707 30207687 ~ 30208537 (-)
G15708 NA non-coding downstream 11129 30204822 ~ 30205115 (-)
G15690 NA non-coding downstream 102960 30109453 ~ 30113284 (-)
G15675 NA non-coding downstream 171679 30042575 ~ 30044565 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding downstream 174369 30038790 ~ 30041875 (-)
G15716 NA non-coding upstream 10139 30233548 ~ 30236867 (-)
G15746 NA non-coding upstream 206520 30429929 ~ 30431998 (-)
G15845 NA non-coding upstream 775225 30998634 ~ 31002128 (-)
G15854 NA non-coding upstream 809661 31033070 ~ 31033320 (-)
G15864 NA non-coding upstream 879970 31103379 ~ 31106792 (-)
G15706 NA other downstream 13893 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 990657 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1430737 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 2059044 28130012 ~ 28157200 (-)
G15076 NA other downstream 2787593 27424893 ~ 27428651 (-)
G15787 NA other upstream 302883 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1157138 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2038140 32261549 ~ 32267968 (-)
G16247 NA other upstream 2199649 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 2274098 32497507 ~ 32507319 (-)

Expression


Co-expression Network