AMCG00016786


Basic Information

Item Value
gene id AMCG00016786
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30472982 ~ 30478017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016786
CCACTGTCAGCCTGCGGCTAGAGCACGAGGAAGCAGACTATAATGATGTCAGCAATAAGCAGACTGCTGGCCTCTTTCAGCTGGTCTGTGTTGCTACAGAAGTCCCTGCATTTTCTTCTCAACATGCTGAGGTTCCACACAGGCGCTGCTGTCCTGGCGCTCACAGCCGCGTGGGTCTGCCAGGCTGACGTTGGGGACTTTACACCATGCGAGAGGTTTTTCTACAACGCTTGGCCGCCCAAGGGCCTGGTGGGGGCTGCCATCTGCCAGCGGTACTTGAATAAGTACCACTTTGCCAGCCTGTATGACCGCCACCGACGCACCCCTTCTTACTCGGCTTATCTCTTCTCTCCAGCAGACACCAAGAGACCTCACACGCACTGGAAGTATGAACCCCAGCTTGCTTATGCCAAAGCAGATGGAAACATGATTCCCTTCCCACCAGGACCTGTGGACCAGAATGTGGTGCAAAGCCAGGCCATTGAATTGGACTACATTAACTCCAGCTACACCCGCGGCCATCTGAGCCCCAGCCTCCACCACAGTGACGATATAGACAAATGCGCCACCTTCACCCTCACCAACGTTGTGCCACAGAAGGGACCGTCGAATGACGGACCCTGGGCTGCATTCGAGAAGGACATTAAAAACAGACTCACAAGCTACTGTGCAAAGGAAGCCTATATAGTAACAGGGGTCATCCCTTACCAGAAGGACCGGTGGATAAAGGGAGATAGGGTGGCCATACCGGAATATCTGTGGTCAGCCTACTGTTGCCCCAGCTATAATACATCCATCCCTGCAAACCTGACCCAGGCATTTCCAACTTACGCCGCCATCGGACGCAACGATCCCAACAGCACAGAGGAGATAGTGCCAGTAGACAAGACTCGACCCAAGAAATACCTGGGTTATGATGACGTGCAGGTGCAGTCTGAATGTCAGTGCTGGTCTGAGCCTGTCTTCCTTCCAGAGACACTGAGGTGA

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016786 True 987 mRNA 0.54 3 30472982 30478017

Neighbor

gene id symbol gene type direction distance location
AMCG00016788 NA coding upstream 11614 30455974 ~ 30461368 (+)
AMCG00016783 NA coding upstream 19880 30448280 ~ 30453102 (+)
AMCG00016784 NA coding upstream 33539 30434853 ~ 30439443 (+)
AMCG00016785 NA coding upstream 62603 30377746 ~ 30410379 (+)
AMCG00016782 LOC107688136 coding upstream 112599 30359467 ~ 30360383 (+)
AMCG00016787 NA coding downstream 3725 30481742 ~ 30483527 (+)
AMCG00016790 NA coding downstream 11754 30489771 ~ 30512299 (+)
AMCG00016791 NA coding downstream 37344 30515361 ~ 30527807 (+)
AMCG00016789 atxn7l3,LOC107660606,LOC108276986 coding downstream 53015 30531032 ~ 30550430 (+)
AMCG00016795 NA coding downstream 86549 30564566 ~ 30569822 (+)
G15730 NA non-coding upstream 41188 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 257272 30213172 ~ 30215710 (+)
G15605 NA non-coding upstream 453295 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 579488 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 1046365 29425900 ~ 29426617 (+)
G15817 NA non-coding downstream 427593 30905610 ~ 30906839 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 527880 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 555052 31033069 ~ 31033321 (+)
G15961 NA non-coding downstream 997290 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 1026062 31504079 ~ 31504552 (+)
G15659 NA other upstream 236141 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 359698 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 365255 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 389454 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 1216158 29234504 ~ 29256824 (+)
G15855 LOC105013322 other downstream 581323 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 995689 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 1223652 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 1250539 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 1773791 32251808 ~ 32260627 (+)

Expression


Co-expression Network