AMCG00016793


Basic Information

Item Value
gene id AMCG00016793
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30558256 ~ 30563594 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016793
GTCAGTCTGACTGATGAAATTTGCCTGCAGTACAGAAGCCGGGCTCAAATGCAGTTCCTGATATACAAACACCCAGGTTAACTTATGGATGCCCAGGCGGTTGTGAGTTGTAATAATTCCTAAAAGTCATCAACCTGCCATTTTACTGGATTCTACAGAAGTGGCGTGAGTACAGGGTGACTGTAACAGAAGCACACTACAGCAATGTCCAGGGACACGTTTGTCTTCACCTCTGCCACCCTGCGCTCACTGAGGTTGCAGCAGGAGTTCCTggactgggagagagagcgCCGCGCCCTGGCCAGGCGGAGTGCTGCTGTAAGAAGACCCCTGCCCCCAGTCAGGCAGAATCTTGTCCCCAGACAGACCCCTGAGTCCAAGTACTGCCGTGACACTGCCATTCATGGCACACTCCTCTCTGGGGACCCTGTGAAAGTCAAGTCCATCTTCAGAGATGAGGCTATGGCCAATGCCATCATGGAAACAGTCCAGGATGAGATGGTCTGGTCCGCCGAGCTGGGGCATTGGGTACTTACTTCCAAAACTAAGCAGAGTTCAGCACTGCGTATTACTGCAAGCCGGGGATTCACTGCTTGTGCCAAGGCCCTATTGACTGCAGGTGCTGATGTTAATGCCTCAGTTGGGGGCACCACTGCCCTGCATGATGCCTGCACTGGtggacacactgactgtgtcaACCTCTTGCTCAGCTATGGTGCCAACCCTAACATCCTCTCCTCAGAAGGCTGTGCTCCATtgcatctctgcagcactcccaAAACCTACCAGTGTGCCAAGCTCCTTGTGGAGTATGGGGCGACAGTGAACATCCACACCAAGGACAGCCAGCTCACTCCTCTGCATGTGGCGGCCAAACAGGGCCTGGAGGAGCATCTGGCCCTCTACCTGTGCCACGGGGCGGATATTTTCTCCAGGAACCGTGAGGGGGAGACAGCACTCAATACAGCTTGTGCTGGGGCTGAGAGGCCTTCTGAGGGGGGGCGCTACTACCGTGTGGTCCAGCGGCTACTGAGCAGTGGGGCCGACCCCAGGGTGGCAGGTAGGAAGCAGCACACCCCACTTCACAATGCCTGTGCTAACTGCAGCTACAGGATCATAAAGCTGCTGCTGGAGCATGGAGCAGAAGTCAACCTCACCAACTGTGCTGGGTACTCTCCTATGGACTGCTTACTCCAGGTGGTGGAGGACTACTTGGAGTATGAGCCAGAGAGAATGGTCCAATCACTGCTCAATCACGGGGCTCTGCCTGTCCACCCAAAGATGCTAAAACTGTGCTCATCGTCCCCTCTGACCATGGAAGTGCTTCTGAACTCCTATGACAACATCCCACTTTGTAATTCCTGGGTTGAAACTGTACCACCGGAAGTTTGGCAGAATCACCAAACGTTCTATGAGTCTGTGCTGCAGATGAGCAAGCAGCCCCGTCGGCTGCAGCACCTGTCCCGCTGTGCCCTGCGCCGCCACCTCGGAGCACACTGCCACTCCGCCATCACCCTGCTGGACCTGCCCCAGTCACTCAAGGTCTACCTCTTGCTCGAGACAGAAGGATGTCTGAAATGACCACAAGAACAGTGTTCTTCCGAGTCCACCTCCTCTCAGTTTTAAGTACTTCTGGATTTccctaaaaaaaaatcacagaccAGAACAGAACCAACATTCAGGAATAGTTTAGAGCGAGTAAAGCTGATAAGAAGAATGGAATCAAGGTGACAGCAGGCACACTTTTACGGGGAGGCCATGACTACCCAGCGTGGGATGTTTTAACCTTCACAATGTTTATGCTAAGGACACAATCTCTGACCACACAGTGCCCTGTTATTtactcttatttattatttaactgtGAAATAAATGCCTTTAGTAATATTCTGTCATAATACTGACATCCCggaatgtaattataatatactTCAACATTTTCTCTGTTGTTTTGCACATAAACATGCTTATTTAGGCTATTCTAATTAAGGAATACTTTTGACAATTCTGACAGGGAAATATCAGTtggaatatttgtattataattattattatcattggtgtattttgtcttgtgaatgtgaaaattaataattaaaatgtaaaccttgTTGAACAAA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K10338 ASB16; ankyrin repeat and SOCS box protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016793 True 2120 mRNA 0.50 7 30558256 30563594

Neighbor

gene id symbol gene type direction distance location
AMCG00016792 NA coding downstream 464 30551128 ~ 30557792 (-)
AMCG00016794 NA coding downstream 90452 30465157 ~ 30467804 (-)
AMCG00016780 NA coding downstream 316687 30236974 ~ 30241569 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding downstream 334847 30216244 ~ 30223409 (-)
AMCG00016775 NA coding downstream 383968 30161793 ~ 30174288 (-)
AMCG00016801 psmc5,LOC107753303,LOC107745657,LOC106579096 coding upstream 439512 31003106 ~ 31008426 (-)
AMCG00016800 NA coding upstream 448969 31012563 ~ 31015970 (-)
AMCG00016802 LOC105013322 coding upstream 496757 31060351 ~ 31060686 (-)
AMCG00016807 becn1,LOC102786760 coding upstream 613962 31177556 ~ 31183301 (-)
AMCG00016812 NA coding upstream 728688 31292282 ~ 31315388 (-)
G15746 NA non-coding downstream 126258 30429929 ~ 30431998 (-)
G15716 NA non-coding downstream 321389 30233548 ~ 30236867 (-)
G15711 NA non-coding downstream 349719 30207687 ~ 30208537 (-)
G15708 NA non-coding downstream 353141 30204822 ~ 30205115 (-)
G15690 NA non-coding downstream 444972 30109453 ~ 30113284 (-)
G15845 NA non-coding upstream 435040 30998634 ~ 31002128 (-)
G15854 NA non-coding upstream 469476 31033070 ~ 31033320 (-)
G15864 NA non-coding upstream 539785 31103379 ~ 31106792 (-)
G15890 NA non-coding upstream 608591 31172185 ~ 31176602 (-)
G15927 NA non-coding upstream 806486 31370080 ~ 31379449 (-)
G15787 NA other downstream 28756 30526292 ~ 30529500 (-)
G15706 NA other downstream 355905 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 1332669 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1772749 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 2401056 28130012 ~ 28157200 (-)
AMCG00016815 NA other upstream 816953 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 1697955 32261549 ~ 32267968 (-)
G16247 NA other upstream 1859464 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 1933913 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 2612482 33176076 ~ 33178883 (-)

Expression


Co-expression Network