Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00016809 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 31363835 ~ 31370349 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0048037 | obsolete cofactor binding | molecular_function |
| id | description |
|---|---|
| K23167 | VAT1; synaptic vesicle membrane protein VAT-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00016809 | True | 696 | mRNA | 0.53 | 4 | 31363835 | 31370349 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016810 | LOC105013316,LOC108413532,LOC106607262 | coding | upstream | 12659 | 31344014 ~ 31351176 (+) |
| AMCG00016808 | NA | coding | upstream | 133040 | 31183690 ~ 31230795 (+) |
| AMCG00016806 | NA | coding | upstream | 187298 | 31142408 ~ 31176537 (+) |
| AMCG00016804 | NA | coding | upstream | 234240 | 31113727 ~ 31129595 (+) |
| AMCG00016803 | NA | coding | upstream | 251927 | 31107429 ~ 31111908 (+) |
| AMCG00016814 | NA | coding | downstream | 22822 | 31393171 ~ 31412053 (+) |
| AMCG00016813 | phb,LOC107661032 | coding | downstream | 47632 | 31417981 ~ 31420976 (+) |
| AMCG00016819 | znf652,LOC108258819 | coding | downstream | 76770 | 31447119 ~ 31467459 (+) |
| AMCG00016817 | NA | coding | downstream | 122903 | 31493252 ~ 31503016 (+) |
| AMCG00016818 | eftud2,LOC102798265 | coding | downstream | 137202 | 31507551 ~ 31523662 (+) |
| G15853 | NA | non-coding | upstream | 330514 | 31033069 ~ 31033321 (+) |
| G15847 | psmc5,LOC107745657,LOC107684752 | non-coding | upstream | 356829 | 31005897 ~ 31007006 (+) |
| G15817 | NA | non-coding | upstream | 456996 | 30905610 ~ 30906839 (+) |
| G15730 | NA | non-coding | upstream | 932041 | 30429053 ~ 30431794 (+) |
| G15651 | NA | non-coding | upstream | 1148125 | 30213172 ~ 30215710 (+) |
| G15961 | NA | non-coding | downstream | 104958 | 31475307 ~ 31476218 (+) |
| G15966 | NA | non-coding | downstream | 133730 | 31504079 ~ 31504552 (+) |
| G15995 | NA | non-coding | downstream | 244871 | 31615220 ~ 31644515 (+) |
| G16037 | NA | non-coding | downstream | 384693 | 31755042 ~ 31755427 (+) |
| G16169 | NA | non-coding | downstream | 891362 | 32261711 ~ 32262672 (+) |
| G15855 | LOC105013322 | other | upstream | 302690 | 31059340 ~ 31061145 (+) |
| G15659 | NA | other | upstream | 1126994 | 30236454 ~ 30236841 (+) |
| AMCG00016770 | rpl27,LOC106601555,LOC107551168 | other | upstream | 1250551 | 30109599 ~ 30113284 (+) |
| AMCG00016769 | NA | other | upstream | 1256108 | 30022607 ~ 30107727 (+) |
| AMCG00016820 | NA | other | downstream | 103357 | 31473706 ~ 31493104 (+) |
| AMCG00016829 | NA | other | downstream | 331320 | 31701669 ~ 31731446 (+) |
| AMCG00016830 | NA | other | downstream | 358207 | 31728556 ~ 31751113 (+) |
| AMCG00016841 | NA | other | downstream | 881459 | 32251808 ~ 32260627 (+) |
| AMCG00016854 | NA | other | downstream | 1128707 | 32499056 ~ 32503372 (+) |
