AMCG00016810 (LOC105013316,LOC108413532,LOC106607262)


Basic Information

Item Value
gene id AMCG00016810
gene name LOC105013316,LOC108413532,LOC106607262
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31344014 ~ 31351176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016810
ATGTCTGGAGAAGAAGCACCTGCTCAGCAGCCACAGAAGCCCGAAGAACAAAAGCAAGACCCCAAGCCAACCGAGGAGCCCAAGCCGGAGCCCcaggcggcggcggcggcggcggacGCGGCGGCAGAGACGGCGCCCGAGAAAGCGCCCGAGGAAGACGTGGTCACCTACCGGTCCCTGGTGCTCTCCGGCTATGGGGGCTACGACAAAGTGAAGCTGCAGGTGAAGAAGGGGATGCCCAGCCCCAAAGCCGGGGAGGTGGTGGTGCGGGTCAAGGCTTGCGGCTTGAATTTTGCCGACTTGTTGGCCAGACAGGGTCTCTACGACCGGCTGCCCTCCCCGCCCTTCAGCCCCGGGATGGAGTGCTCGGGGGTCGTGGAGATCGTGGGGGAAGAAGTGACGGACAGAAAAGTCGGCGACAAGGTCATGGTCCTGAACAGGTCAGGCATGTGGCAGGAAGTGGTTGCTGTGCCTGCCAGCCACACCTTCATAATGCCCGAGGGGATGACCTTCGAGGAGGCAGCTGCCATCCCAGTGAACTACGTCACCGCCTATATGATGCTGTTTGACTTTGGCAACCTGAGGCCCAACCAGAGTGTCCTCATCCACATGGCAGCT

Function

NR:

description
PREDICTED: synaptic vesicle membrane protein VAT-1 homolog

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016810 True 618 mRNA 0.62 2 31344014 31351176

Neighbor

gene id symbol gene type direction distance location
AMCG00016808 NA coding upstream 113219 31183690 ~ 31230795 (+)
AMCG00016806 NA coding upstream 167477 31142408 ~ 31176537 (+)
AMCG00016804 NA coding upstream 214419 31113727 ~ 31129595 (+)
AMCG00016803 NA coding upstream 232106 31107429 ~ 31111908 (+)
AMCG00016805 NA coding upstream 240401 31072994 ~ 31103613 (+)
AMCG00016809 NA coding downstream 12659 31363835 ~ 31370349 (+)
AMCG00016814 NA coding downstream 41995 31393171 ~ 31412053 (+)
AMCG00016813 phb,LOC107661032 coding downstream 66805 31417981 ~ 31420976 (+)
AMCG00016819 znf652,LOC108258819 coding downstream 95943 31447119 ~ 31467459 (+)
AMCG00016817 NA coding downstream 142076 31493252 ~ 31503016 (+)
G15853 NA non-coding upstream 310693 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 337008 31005897 ~ 31007006 (+)
G15817 NA non-coding upstream 437175 30905610 ~ 30906839 (+)
G15730 NA non-coding upstream 912220 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 1128304 30213172 ~ 30215710 (+)
G15961 NA non-coding downstream 124131 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 152903 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 264044 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 403866 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 910535 32261711 ~ 32262672 (+)
G15855 LOC105013322 other upstream 282869 31059340 ~ 31061145 (+)
G15659 NA other upstream 1107173 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1230730 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 1236287 30022607 ~ 30107727 (+)
AMCG00016820 NA other downstream 122530 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 350493 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 377380 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 900632 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 1147880 32499056 ~ 32503372 (+)

Expression


Co-expression Network