AMCG00016812


Basic Information

Item Value
gene id AMCG00016812
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31292282 ~ 31315388 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016812
ATGGCGAGACTCCAGGCCCAGAGGGAATGTGAAATTAGTATCCCACGCTCCCAAGGTTCCTCATACTACGACAACGTTCGTCCCTTAGCTTACCCAGACTCTGATGCCGTGCTCATCTGCTTCGACATCAGTCGCCCAGAAACTCTGGACAGCGTCCTCAAAAAGTGCTCAATGCGGTTCTCCGTGACCTTTGACTCACACTGCCCCAGGGTTGCTGGCATGAGTGGCAGTCAAGAGTACCTTGCAGTTTCACTCAAACTTTTTCTTGTTCTGCAGTGGCAGGGGGAAACACAGGAGTTCTGCCCCAATGCGAAGGTTGTGCTGGTGGGGTGTAAACTGGACATGAGGACAGATCTGAACACACTGCGTGAGCTCTCCAAACAGAGACTAATACCAGTCACACATGAGCAGGGAAGCACACTGGCGAGACAGATCGGAGCCGTGGCGTACGTCGAGTGCACCTCAAAAGTGTCTGAGAACAGCGTGCGAGATGTCTTCCACATCACCACCCTGGCCTCTGTCAACAGGATACACAAAACCCTGAAACGCAGCAACTCCAAGCGAGGACTGAAGCGCGTTTCGCAGTTGCCTGGACGGACTGAATTGTTGGACAACACAGAAATGCGGAAGGACCGTGCGAAGAGCTGCTCCATCATGTAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016812 True 660 mRNA 0.53 5 31292282 31315388

Neighbor

gene id symbol gene type direction distance location
AMCG00016807 becn1,LOC102786760 coding downstream 108981 31177556 ~ 31183301 (-)
AMCG00016802 LOC105013322 coding downstream 231596 31060351 ~ 31060686 (-)
AMCG00016800 NA coding downstream 276312 31012563 ~ 31015970 (-)
AMCG00016801 psmc5,LOC107753303,LOC107745657,LOC106579096 coding downstream 283856 31003106 ~ 31008426 (-)
AMCG00016793 NA coding downstream 728688 30558256 ~ 30563594 (-)
AMCG00016811 NA coding upstream 21057 31336445 ~ 31337280 (-)
AMCG00016816 NA coding upstream 85429 31400817 ~ 31403944 (-)
AMCG00016823 nmt1,LOC102778525 coding upstream 328468 31643856 ~ 31653933 (-)
AMCG00016824 NA coding upstream 342860 31658248 ~ 31674496 (-)
AMCG00016831 NA coding upstream 440147 31755535 ~ 31762700 (-)
G15890 NA non-coding downstream 115680 31172185 ~ 31176602 (-)
G15864 NA non-coding downstream 185490 31103379 ~ 31106792 (-)
G15854 NA non-coding downstream 258962 31033070 ~ 31033320 (-)
G15845 NA non-coding downstream 290154 30998634 ~ 31002128 (-)
G15746 NA non-coding downstream 860284 30429929 ~ 30431998 (-)
G15927 NA non-coding upstream 54692 31370080 ~ 31379449 (-)
G15947 phb,LOC107661032 non-coding upstream 105356 31420744 ~ 31421968 (-)
G15962 NA non-coding upstream 161455 31476843 ~ 31481401 (-)
G15976 NA non-coding upstream 173873 31489261 ~ 31489836 (-)
G15982 NA non-coding upstream 188691 31504079 ~ 31504548 (-)
G15787 NA other downstream 762782 30526292 ~ 30529500 (-)
G15706 NA other downstream 1089931 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2066695 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2506775 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 3135082 28130012 ~ 28157200 (-)
AMCG00016815 NA other upstream 65159 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 946161 32261549 ~ 32267968 (-)
G16247 NA other upstream 1107670 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 1182119 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1860688 33176076 ~ 33178883 (-)

Expression


Co-expression Network