AMCG00016818 (eftud2,LOC102798265)


Basic Information

Item Value
gene id AMCG00016818
gene name eftud2,LOC102798265
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31507551 ~ 31523662 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016818
GAACGTAGGGGAACCGCGCCGTTGAAAACAGCCgcagaaacacatttacaagGTGGATTAAATACAAGACTTAACCCGCAAAACACAGACCCTTACAACATGGAGGCGGACTTGTATGATGAGTTTGGAAACTATATCGGGCCGGAGCTGGACTCTGATGACGACGATGACCTGGACAGGGAAGACCGAGATGCAGATGAGGCTGATGAGGATGATGAAGATGAGCCGGCTGACCCTGATGAAGAGACTCCCGGCATGGAGGTGGTTCTCCATGAGGATAAGAAGTACTACCCCACGGCGGAGGAGGTGTACGGGCCCGAGGTGGAGACCATTGTCCAGGAGGAGGACACCCAGCCACTCACAGAGCCCATTATTAAACCAGTCAAGACAAAGAAGTTCACACTGATGGAGCAGGAGCTGCCGTCCACCGTCTATGACATGGATCCCGAGCTGATTCGAAACGTCACCCTGTGTGGCCACCTGCACCACGGCAAGACCTGCTTCGTGGACTGCCTGATCGAGCAGACCCACCCCGAGATCCGCAAGCGTGACGACATGGATCTGCGTTACACTGACATCCTTTTCACAGAGCAGGAGCGAGGAGTTGGCATCAAGAGTACCCCTGTCACTTTGGTCCTGCCAGACTCCAGGGGGAAATCTTACCTCTTTAACATCATGGACACACCAGGCCATGTGAACTTCTCCGATGAGGTGACGTCAGGAATCCGAATCTCTGACGGCATCGTGCTCTTCATCGACGCTGCTGAAGGGGTCATGCTGAACACGGAGCGCCTGATCAAGCACGCCGTGCAGGAGCGCCTGGCTGTCACCATCTGCATCAACAAGATCGACCGGCTCATTGTGGAGTTGAAGCTGCCGCCCACCGATGCCTACTACAAACTGAGGCACATCGTGGACGAGGTCAACGGCATGCTCAGCATGTACAGCACCGATGAGAACCTGATCGTGTCTCCCCTGCTGGGCAATGTGTGTTTCGCCAGCTCTCAGTACAGCATCTGCTTCACTCTGGGCTCCTTCGCCAAGATCTACTCTGACACCTACGgtgACATTCACTACATGGAGTTTGCGAAGAGGCTCTGGGGAGACATTTACTTCAACCCCAAAACGAGAAAGTTTACCAAGAAAGCACCCAACAGCAACTCCCAGCGCAGCTTTGTTGAGTTTGTGCTCGAGCCGCTGTATAAGATCCTGTCTCAGgtggtgGGAGACGTGGACACCTCGCTGCCCCGTGTGCTGGACGAGCTGGGCATCCACCTGACCAAGGAGGAGCTCAAGCTCAACATCCGACCCCTACTGCGCCTTGTCTGCAATCGCTTCTTCGGGGAATTCACAGGTTTTGTGGACATGTGTGTGCAGCATATCTCTTCGCCGCAGGATGGAGCCAAAAACAAGATCGAGCACAGTTACACGGGGGGGCTGGACTCGGACCTGGCAGAGGTCATGGTGGAATGTGACCCAGATGGCCCTCTCATGTGCCACACCACAAAGATGTACAGCACGGAGGACGGGGTGCAATTCCATGCTTTCGGGAGGGTGCTTAGTGGCACCATCCACGCGGGGCAGCCTGTGAAAGTGCTGGGGGAGAACTACACCCTGGAGGACGAGGAGGACTCTCAGATCTGCACTGTGGGCCGCCTCTGGATCTCTGTGGCCAGGTACCAGATTGAGGTGAACCGGGTGCCCGCGGGGAACTGGTTGCTGATCGAGGGGTGCGACCAGCCCATTGTGAAGACGGCCACCATCACAGAGCCCCGTGGCAATGAAGAGGCTCAGATCTTCCGGCCTCTGAAGTTCAACACGGCCTCTGTGATTAAGATCGCTGTGGAGCCTGTCAACCCCTCGGAGCTGCCCAAAATGCTGGACGGACTCAGGAAAGTGAACAAGAGCTACCCCTCCCTCACCACTAAGGTGGAGGAGTCCGGGGAGCACGTGATCCTGGGCACTGGGGAGCTGTACCTGGACTGCGTCATGCACGACCTGCGGAAGATGTACTCTGAGATTGACATCAAGGCAAGTGCCGCTCTCTATAATCCACACTCTGGGGAGGCGGTGGCTGACCCCGTGGTGACCTTCTGCGAGACTGTGGTAGAAACCTCCTCCTTGAAGTGTTTTGCAGAAACGCCCAACAAAAAGAACAAGATCACAATGATTGCCGAGCCTCTGGAGAAAGGCTTGGCTGAAGACATTGAGAACGAAGTGGTGCAGATCACATGGAACAGGAAAAAGCTGGGAGAGTTTTTCCAGACCAAATACGACTGGGATCTTCTAGCTGCTCGATCCATCTGGGCATTTGGCCCAGACGCCACTGGCCCCAACATCCTTGTGGACGACACTCTCCCCTCAGAGGTGGACAAGGCGCTGCTGGGCTCTGTGAAGGACAGCATCGTGCAGGGCTTCCAATGGGGGACGAGGGAGGGCCCGCTGTGCGACGAGCcCATCCGCAATGTGAAGTTCAAGATCCTGGATGCAGTGATTGCGCAGGAGCCGCTGCATCGCGGAGGGGGACAGATCATTCCCACTGCCCGCCGAGTTGTCTACTCCGCCTTCCTCATGGCCACCCCTCGTCTGATGGAGCCCTATTACTTTGTGGAAGTGCAGGCCCCGGCCGACTGTGTGTCTGCTGTCTACACTGTGCTGGCCCGCAGGAgAGGTCATGTGACCCAGGATGCGCCCATCCCCGGCTCTCCCCTCTACACCATCAAGGCCTTCATTCCCGCCATTGACTCCTTCGGCTTCGAGACAGACCTGCGCACCCACACCCAGGGCCAAGCCTTCTCCCTGTCCGTCTTCCACCACTGGCAGATCGTGCCCGGTGACCCCCTGGACAAGAGCATTGTGATCCGGCCCCTGGAGCCCCAGCCTGCCCCACACCTGGCCCGCGAGTTCATGATCAAGACACGCCGGCGCAAGGGGCTCAGCGAGGACGTCAGCATCAGCAAGTTCTTCGATGACCCTATGTTGTTGGAGCTGGCCAAGCAGGATGTGGTGCTCAACTATCCCATGTAGCCCTGGGGAGATGCGCGCCTCCTTCCGTGTCAGGACGTGCTTCAATCCATGCAGGGGAGTCTCTTTGAGAGCTGATTTCCTTCCTACTGAACAGCCAACCATGGGAACAATTTGGGGGCTATTCCCAtgggctgttttgttttctgatttataattatttttataaaccacagaacacaaaacttaaaaaacaaacaaaacaaaaaaaacttcaaaatgtTCATCTGGTGTATCTCTTGTGACCTCTGCCTCCCATCTTTTCggtttgtagtttttgttttctaaatttgAGCACCCTGGACAAGCTTTCAGTGCAGTGCAAAGTTAAATctgtattattgattttgtttttttcttcatccttTAACTCGCAAAACAATCCTACAGAAAAGCCTTAGTCTTTTGTGAGTTTTATGAATTTTGATCCAGTGAGGTGCTCGATTGACTGACACCTATTAAGGACATTGAATTCACTTGAATAAGACCTGCTGCAGCTTCAATTGACACATGTGATCTTCTAGTATTCTAGAAATGAGTTCACAGGTATGAAGCCTTTGCCAGTCCAGGCCCCCCCCATGAAGCCCTTTGGTCTTCTGCCCCCCCGatgtcagcacagtggacaaGAGATGCCAgttttctctgcctctctgtgggTTGAGTGTCTTTCAACTGGTATGGCCCCTGCAAGCCATAATGAAAACCATCCGGGCaataaatgatcagtttctgatttttctcttttattttgatgtttggaattaaaatattcaacattAGATTTCTGTTCGGGAAATGCAGATTTTGCAAGAACCTACAGGAAGTAAAACTTGAAATGCTCTGCTCTGCAATGGGAGTCTGATTTGCTTTCCAGCAGAGACCCCCTTTAGCAGGCAAATCTGACCCCCACACAGGTGtgattgtcttgtttttttttttttttttttatatatatataaatggactCAAGATTTGTAGAAAAAGTTGGAAGCAGGCTTGgtgatatgtattttaattaggtATGGTTTATTGACATtcaaatgtgaataaataaaagctcaGC

Function

symbol description
eftud2 Predicted to enable GTPase activity and U5 snRNA binding activity. Acts upstream of or within several processes, including camera-type eye development; mRNA splicing, via spliceosome; and regulation of neuron differentiation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 2 spliceosome and U4/U6 x U5 tri-snRNP complex. Predicted to be active in cytosol. Is expressed in head; immature eye; and nervous system. Used to study Treacher Collins syndrome and mandibulofacial dysostosis, Guion-Almeida type. Human ortholog(s) of this gene implicated in esophageal atresia and mandibulofacial dysostosis, Guion-Almeida type. Orthologous to human EFTUD2 (elongation factor Tu GTP binding domain containing 2).

NR:

description
PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12852 EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016818 True 4087 mRNA 0.52 28 31507551 31523662

Neighbor

gene id symbol gene type direction distance location
AMCG00016817 NA coding upstream 4535 31493252 ~ 31503016 (+)
AMCG00016819 znf652,LOC108258819 coding upstream 40092 31447119 ~ 31467459 (+)
AMCG00016813 phb,LOC107661032 coding upstream 86575 31417981 ~ 31420976 (+)
AMCG00016814 NA coding upstream 95498 31393171 ~ 31412053 (+)
AMCG00016809 NA coding upstream 137202 31363835 ~ 31370349 (+)
AMCG00016826 NA coding downstream 43240 31566902 ~ 31569427 (+)
AMCG00016822 NA coding downstream 56480 31580142 ~ 31591537 (+)
AMCG00016821 NA coding downstream 87955 31611617 ~ 31634762 (+)
AMCG00016825 NA coding downstream 111397 31635059 ~ 31637045 (+)
AMCG00016828 NA coding downstream 163340 31687002 ~ 31694751 (+)
G15966 NA non-coding upstream 2999 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 31333 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 474230 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 500545 31005897 ~ 31007006 (+)
G15817 NA non-coding upstream 600712 30905610 ~ 30906839 (+)
G15995 NA non-coding downstream 91558 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 231380 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 738049 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 914592 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 1333889 32857551 ~ 32859016 (+)
AMCG00016820 NA other upstream 14447 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 446406 31059340 ~ 31061145 (+)
G15659 NA other upstream 1270710 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1394267 30109599 ~ 30113284 (+)
AMCG00016772 g6pc other upstream 1424023 30072938 ~ 30083528 (+)
AMCG00016829 NA other downstream 178007 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 204894 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 728146 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 975394 32499056 ~ 32503372 (+)
G16289 NA other downstream 1332699 32856361 ~ 32857440 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026238 eftud2 coding NC_007114.7 CM002887.2 16389020 ~ 16413635 (-)
grasscarp (Ctenopharyngodon idella) CI01000133_00076647_00087676 EFTUD2 coding CI01000133 null 76139 ~ 87834 (-)