AMCG00016820


Basic Information

Item Value
gene id AMCG00016820
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31473706 ~ 31493104 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016820
ATGCCCCTGcccctcacctcctcctctgCCCCGGCACCGCCTCCCCCTACCGCCTCGTCCCCGTCGCCCGCCAGCCCCCCCACCGCCGCGCCCATGGGACTCAGTCCCGTCAGCTCGCTGCCCCCCCGGCCCCTGGGCCACCCCTTCTCCCACCTCCACCTGCACtcgcaccaccaccaccaccaccccccccaccaccacctccccGTCGACGACAGGACCAGTGTGGGGGGAATGGGGAAATCTCTGAATGAATTCCTTGCCTTCTCCTGTGTTTTCAGTAATTGTCAGCTGATCAGGCTGCTCCCAGAAGATTGTGGGCTAAGAAGCTATAGACTGCAAAGTGGGGCTCCAGACACCAATAGATATCACGGCATAGGAGCCATAAACAAGATAGTTCGCTCCAAGGTCTCGGCAATCATCCGATGCAAGGCTGTTGTCTTTGTCATCTTCCGGACGGGAACATTCAGTCTCTGGTTCTTCGCGGTCAGGATCGCCGCACAATAA
>TU19813
CTTAATAGCTGTTTTTATGTTAGAATGTGGGAGTGATTGCTAGCCTGACAAATAGTGCATGTTATGGGCAGCTGGAAAACACGACTCCGACTCAGTGGCAGAGGGGTGGGCTTTGAATTACGGTGGGAGTGGTGTCCAAATTGCTGCCCTTGGTTAATAGATGCCAGGTATACAGGAAAGCCACATCAGATATCTGACAAATGGAGAATACTCTGTACTGGTTTATGCTTAAACCCACTCTAAAACTACAGGTGGTCGGACCTCTAAGGAAAAGATCATTTTTGCAGACTGTTTCAACTCACCACTTTAGCAGGCCTGTTTTGCTCTAACTATgccagaaaaaactaaatcccaCCCCTTGGGCTCAAGTCACTCTTGCcttgttattgatttcttatttttctttttttttgatGGAGCAAGAAGGTTATAACTGGTTGGAGGCAATGAGGTTGTTTTGCTATTCCTAATCTTGACCCCTTTAGACACAGTGCTGGTGCCACATACTTTTTTACCAGGTCTGCGTGGATTGTTATAGACTAAGCCAGTCCTTCACGGTTTCAAATACTGTCTGCGACCTACTTGAAACAATCAGTGTGTGGGTCAGAAAGGCAACTGACAGGATCAAATccagtatttgtattgtttgtgtatgtgttttttatatataaaatatatacagtaccaTTTACACTAAATTATTTCTCACAGAAAAAAGTGACATAGTTTTATTAGGAAAagcctttattttaaagaatacaagTACAGAATTCATGGGTGTACTAGGAAACAGGGCTGATTTACTCTCTTGAAGTTGTTCTTCCGTATGTTTTTATATCATGCCCcatgtttgtatgcatttttaaagctgGCCGGGTTTCCATTCTGGTCGCACTGCAGAACTGCTGACAGGGCAGGCTTTAAAGTGGAGTGTTGCCGAAATGTAATCGGTTATcactgtctgtttgtgtgccaCTACAGATGTTTTCTACTGCTTTTTAATTGCCAGTTGTCTGTAAGGGAGGGTTTTTGCTGCTGGACTACCACCCAACTCTTCCATGGCAGGACAAATCGCTGCTAACCTCATCCAAGCTCCAGCCATGTTTCCTGTGTCttcgtgcgtgtgtgtgtgcaagattGTCACTGATGCATTCCAATGGTTGTGGAACGTTGGTTTCCTTTGCTGAAGTCATTGTGTGAATTAGaagacctgtttttttttggtttttttgggcgggggggcaggttggttcagttttttttttttttttttttttttttttccctaggAAAAATCTCAAGCTGTGGAATAGAACTGTCAATTCTCTCTCTCGAACTGCTTGATTTAACAAGATGGCTGCTTAGCACAAAGTGTCAATCCAGATACAGAAAAGGGGTCAGGTCAAAACTGACAGGGCAGCCCCCGACATGTGCAGGAGATTGTGCTGCTCTTGTGTTTCTTCCACTTGGAGATTAACTTCGGCCAGACATTCTGTATGGAACAGTAAGCTGTGTGTTCTAGTTGTCTCAATTAATTGATCAGGATTGTATAGGTCAGGAGCTAAAGCGGTTGAATGTTGACCAGCTATTTCTGTGATATTTCTGTGTAAGTCGAAATGGTTCCCAGTTAccttcacatcattttcacattCTTGTAGCCAGGAAGATTGTGGGCTAAGGtgggtttgttgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016820 False 507 mRNA 0.61 5 31473706 31493104
TU19813 True 1693 lncRNA 0.36 1 31479664 31481356

Neighbor

gene id symbol gene type direction distance location
AMCG00016819 znf652,LOC108258819 coding upstream 6247 31447119 ~ 31467459 (+)
AMCG00016813 phb,LOC107661032 coding upstream 52730 31417981 ~ 31420976 (+)
AMCG00016814 NA coding upstream 61653 31393171 ~ 31412053 (+)
AMCG00016809 NA coding upstream 103357 31363835 ~ 31370349 (+)
AMCG00016810 LOC105013316,LOC108413532,LOC106607262 coding upstream 122530 31344014 ~ 31351176 (+)
AMCG00016817 NA coding downstream 148 31493252 ~ 31503016 (+)
AMCG00016818 eftud2,LOC102798265 coding downstream 14447 31507551 ~ 31523662 (+)
AMCG00016826 NA coding downstream 73798 31566902 ~ 31569427 (+)
AMCG00016822 NA coding downstream 87038 31580142 ~ 31591537 (+)
AMCG00016821 NA coding downstream 118513 31611617 ~ 31634762 (+)
G15853 NA non-coding upstream 440385 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 466700 31005897 ~ 31007006 (+)
G15817 NA non-coding upstream 566867 30905610 ~ 30906839 (+)
G15730 NA non-coding upstream 1041912 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 1257996 30213172 ~ 30215710 (+)
G15966 NA non-coding downstream 10975 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 122116 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 261938 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 768607 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 945150 32438254 ~ 32442585 (+)
G15855 LOC105013322 other upstream 412561 31059340 ~ 31061145 (+)
G15659 NA other upstream 1236865 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1360422 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 1365979 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 1390178 30072938 ~ 30083528 (+)
AMCG00016829 NA other downstream 208565 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 235452 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 758704 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 1005952 32499056 ~ 32503372 (+)
G16289 NA other downstream 1363257 32856361 ~ 32857440 (+)

Expression


Co-expression Network