AMCG00016822


Basic Information

Item Value
gene id AMCG00016822
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31580142 ~ 31591537 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016822
cCGTTCCAGGGGTCTGAGAACTCAGTGGCGTGTCTCCGTGCAGGGCAGCGCAGCAGGCAGGGAAGATGCAGCGAAGGGCGCGGGTGCAGCAGCTGGAGGCGGAGCTCTCCCGGGGGAGCCAGCCCTTGACGGGGAAATCCTTCTACCTGGACGTCCTGAAGAGTAAACACTCCACCCTGCTGGTGGAGGCCATTGGCCGCCTGGGAGGGAGAATCGAAAGCTTCCTCAGTAAGGAGGTGAGCTACGTGGTGTCTGGGAGTAGAGAGGCCCGTCAGGACACAAGCGCCTGGCCCAGGGACGGGGAGGCGGGCGACGTGGCGGCCGGCTCCCCCAGCCCGTCGTGTAGGAGAGAGAGCCCAGCTGGTGGCAGCCAGCGCACTGCGGACACGGCGGTGTATGGCAGCCGGGGGAAGGCCTTGGTGGAGAAGGTGATGCGCAACAGTGAGCGCTGTGACGGGAGCAGTGTACTGGCCAACGCTCGCTCCTGGGGGGTGAAGATCCTCTATGTGGACGATTTCCTGGCATACATTGAAAAGGTGTCTATGGAAAGCTCCCAAACCAAGAACAGGAAGCTGGAGAAGAAGCCTGCAGCACCATCTACGAGCCGCGTTATGAAAGCTGGAGCACTAAAGCAGCCCTTTGTGAAAATTGAGGACTCGAGCAGGCGATACAGGCCCTTGCACCAACAGTTTGCCAGCTTCCCTGACCTGGATTTCTCCAGAATCAGCAGATTCAGCCCATTTGAGCCTCCTGCCCCACAGCCTCCTGGGAAGGAGGAGGACAGAGTCAAgGAGAAGAGTCTGGGGTTGCCCACCAGCGATGGGAAGCAGAAGCCTGGCGATCTCATGGCACCCCCCCTGGCAGTCCCCCCTGTACGAGCGAAGAAGAAGAACCAGGGCTTCTGTGAGTGCTGCCAGCAAGCCTTCAAGGAGGAAGACGAGCACCTCCAGTCAGAGCAGCACAGGCACTTTGTCCAGAGCTCCTCTCACTACAGTGTGGTGGACAGACTGATCTCTGAGATGAGCCCCGCATTTGTGGAGAGCCCTGCTGAGATTTCCCTGGAGCTGGTACAGAACAACAGCGAGGTGGAGAAGGCCATCGAAGCCCTGCTGTCCCGACACAGCCCAGAACGGCCAGCGAAAAGCCCGGTTGCCATTCAGGACAGGAGCCCAGACCACTGCCCTGGGATCGCAGGCCAGCCCACACAGCTTGGTCAAACTGGGGGTTCGCCACCAACCAATGACTGCATTGCTGCTCTTGCCACCCCATGCACTGTGGAACCCAGTCTCCAGGAGGGTGACTCCGAGTGCCTGCTGCCGTCTCAGCCTGTGGATGGAGATCTCCTGAAACAGATGGGACAGCCAGCGGTCGAGGAACAAGCTGGAAGTGACTCCCGGGTCAGTGGCCTATCAAAGCCAGAGCCATTGGATCCACAGAAAGATGCTCTGCCTGTCATCTCTCCACCTCCAAAAATCAGGAAGCGTTATAGGTCGGTCAGTACAAGCCCCAGGGCTAAGAAGAGGCGGAGAACCATACTGGACCTCAGGTCAGACCCCACCTTTGGCTGCACGTCTGCCAGTGATCAATTGTACAGCAAGCCTCTTGATACATGCTTAGCACAGCCAGTGATGAAGGCTGCCCCAGGTCCCCAGCTTCAAGACCCTGTCAGTGGGTTACAGGAGATGGCTCTGTGTTCTGTGGTGGCTGAAACGGTACCCCTGGCAGAACTCTGTAACCACAGTGGTGTTCCAGCAAAATCCAGCCACTTGGAACaaggtcattttgtgcatcTTTTCTCACCTGCTGAGAGCCAGCCTTTGGTAGATCAGTCCCAGAGCCCCCTGGAGGTGCAGAGCCCAGAACTGGCCATCCCCACTGCTCCCCAAGAGGATGCTGCAACAGACATCTCTCCGTGTTTTGGGCCCTTTCCTCCTGTGGTTATTAAAGAAGCTTGCCTTCCTCCTTTCCTGGCCCCTCTGGGTACCAGTCTTACCCAGCCTGCCTTTCTGGATCCAGGGCTGACCATGATGGGCATCTTAGAAGCTGGAGTCCCTAACACGAACCAACAGGAGGGCGTGTCTCCCGGCTCGAGTCCCTTTCTCGCTCCGCTGTGCCCCGCAGACCTATCCTCCTGTTGTCTTTCCAAGACGGATGAGGCTGTCGTCTCCACTGCTCCCCACTCGCAGTGTTTCCCCTCAGTGGGCATTGATGACAGCCTGCTGCCCACCGCCAGCTTCTCCTCAGAGTCGGACTGGGACTGCGGCCTGCTGTCTCGGCTGGaagctcctccagctccctgTGGGCAGAGCAACCTGGACCTGGATGTTCTGCGGCGGACGTGTGCCCGGGTGCAGGACAGCGGATACGAGTCAcggctgtgctctgtgctccGTCCCAGCCCCGAGCAGGAGTGGGCGGCCGCTGGCGCCACCTCTCGCTGCAGCAACCAGACTGAGCCACTCCCCTTCAGAGCCCTGGAGCCCTGTCTTGAAGCCGGGCCTGTA

Function

GO:      GO:0008536

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016822 True 2504 mRNA 0.60 11 31580142 31591537

Neighbor

gene id symbol gene type direction distance location
AMCG00016826 NA coding upstream 10715 31566902 ~ 31569427 (+)
AMCG00016818 eftud2,LOC102798265 coding upstream 56480 31507551 ~ 31523662 (+)
AMCG00016817 NA coding upstream 77126 31493252 ~ 31503016 (+)
AMCG00016819 znf652,LOC108258819 coding upstream 112683 31447119 ~ 31467459 (+)
AMCG00016813 phb,LOC107661032 coding upstream 159166 31417981 ~ 31420976 (+)
AMCG00016821 NA coding downstream 20080 31611617 ~ 31634762 (+)
AMCG00016825 NA coding downstream 43522 31635059 ~ 31637045 (+)
AMCG00016828 NA coding downstream 95465 31687002 ~ 31694751 (+)
AMCG00016832 NA coding downstream 108935 31700472 ~ 31701626 (+)
AMCG00016827 tmem98 coding downstream 179389 31770926 ~ 31777458 (+)
G15966 NA non-coding upstream 75590 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 103924 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 546821 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 573136 31005897 ~ 31007006 (+)
G15817 NA non-coding upstream 673303 30905610 ~ 30906839 (+)
G15995 NA non-coding downstream 23683 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 163505 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 670174 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 846717 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 1266014 32857551 ~ 32859016 (+)
AMCG00016820 NA other upstream 87038 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 518997 31059340 ~ 31061145 (+)
G15659 NA other upstream 1343301 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1466858 30109599 ~ 30113284 (+)
AMCG00016772 g6pc other upstream 1496614 30072938 ~ 30083528 (+)
AMCG00016829 NA other downstream 110132 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 137019 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 660271 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 907519 32499056 ~ 32503372 (+)
G16289 NA other downstream 1264824 32856361 ~ 32857440 (+)

Expression


Co-expression Network