AMCG00016823 (nmt1,LOC102778525)


Basic Information

Item Value
gene id AMCG00016823
gene name nmt1,LOC102778525
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31643856 ~ 31653933 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016823
CCCCGGAGACTACGGTTCCCAGCATGCAACGCGGCTCCCGTCCAATAGCAATGACACGTACTGTGGGGGCTGGTGCGTCGCTCAGTTCCTGGTTAAAGATGGCGGATGAGAATGAGACAGCACCGAAGCCGGAGAAAGAAGAAGAGGTAGAAGAAGACCATGGACATTGCAGCGACTGTGAGAATGAGGAGCATCACTGCAGCGACGGAGAGAGAAGCCCAGGGGATGACGGCGGagcaaagaaaaagaagaagaaacagaagaagaaaaaggacaaAGTCGGAGGGAAGGAGTTGGGGCAGGAACAGTCAGCTAAGGTGAACTCTCTGCCTGCAGACAAGCTGCAGGAGATCCAGAAGGCCATCGAGCTGTTCTCTGTGGGCCAGGGCCCAGCCAAAACCATGGAGGAGGCTACCCGGCGCAGCTACCAGTTCTGGGACACCCAGCCTGTTCCCAAACTGGGGGAGGTGGTGATGTCGCATGGCTCCATCGAGCCCGACAAGGACAACATCCGCATCGAGCCCTACAGCCTTCCCCAGGGCTTCACCTGGGATGCTCTGGACCTGGGCAACCCTGCCGTGCTGAAGGAGCTCTACACTCTGCTGAATGAGAACTATGTGGAGGATGATGACAACATGTTCAGATTTGATTACTCCCCCGAGTTCCTCCTCTGGGCCCTCAGACCCCCAGGCTGGCTGCCCCAGTGGCACTGCGGAGTACGGGTGGTCTCCAATAAGAAGCTGGTTGGCTTCATCAGTGCTATCCCGGCCAATATCCGCATCTATGACACagAGAAGAAAATGGTGGAGATTAACTTCCTCTGTGTGCACAAGAAGCTGCGCTCCAAGCGAGTGGCTCCGGTTCTGATCCGGGAGATCACCAGACGGGTCAACCTACAGGGCATCTTCCAGGCTGTCTACACTGCTGGCGTGGTGCTGCCCAAACCTGTGGGCACTTGCCGGTATTGGCACAGGTCTCTGAACCCACGGAAGCTGATCGAGGTGAAGTTCTCCCACCTGAGCCGCAACATGACTATGCAACGCACTATGAAGCTCTACCGCCTGTCTGAGGCTCCTAAGACGGCGGGTCTGCGGACCATGCAGAAGAAGGACGTGCCGGTGGTCCAGCAGCTGCTCCTGGACTACCTAAGGCAGTTCCACCTGACGCCGGTGATGAGtgaggaggaggtggagcaCTGGCTACTGCCCAGGGAGAACATCATCGACACATACGTGGTGGAGACTCCAGAGGGCGTGGTGACGGACTTCCTGAGCTTCTACACGCTGCCGTCCACCATCATGAACCACCCGGTGCACCGCAGCCTGAAGGCGGCCTACTCCTTCTATAACGTGCACACCACCACCCCCCTGCTGGATCTCATGAGCGACGCTCTCATCCTGGCCAAATCGAAAGGGTTTGATGTCTTCAATGCACTGGACCTGATGGAGAACAAGACCTTCCTGGAGAAGCTCAAGTTTGGGATCGGAGACGGCAACCTGCAGTATTACCTGTACAATTGGAAGTGTCCCAGCATGGGCTCAGAAAAGGTTGGCCTGGTGCTGCAG

Function

symbol description
nmt1 Enables glycylpeptide N-tetradecanoyltransferase activity. Involved in N-terminal peptidyl-glycine N-myristoylation and cellular ketone metabolic process. Located in cytosol and plasma membrane. Is extrinsic component of membrane.

NR:

description
PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG:

id description
K00671 NMT; glycylpeptide N-tetradecanoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016823 True 1565 mRNA 0.57 12 31643856 31653933

Neighbor

gene id symbol gene type direction distance location
AMCG00016816 NA coding downstream 239912 31400817 ~ 31403944 (-)
AMCG00016811 NA coding downstream 306576 31336445 ~ 31337280 (-)
AMCG00016812 NA coding downstream 328468 31292282 ~ 31315388 (-)
AMCG00016807 becn1,LOC102786760 coding downstream 460555 31177556 ~ 31183301 (-)
AMCG00016802 LOC105013322 coding downstream 583170 31060351 ~ 31060686 (-)
AMCG00016824 NA coding upstream 4315 31658248 ~ 31674496 (-)
AMCG00016831 NA coding upstream 101602 31755535 ~ 31762700 (-)
AMCG00016833 NA coding upstream 123479 31777412 ~ 31801252 (-)
AMCG00016835 NA coding upstream 149104 31803037 ~ 31818127 (-)
AMCG00016834 NA coding upstream 185898 31839831 ~ 31844052 (-)
G16004 NA non-coding downstream 28643 31604606 ~ 31615213 (-)
G15985 NA non-coding downstream 115235 31528050 ~ 31528621 (-)
G15982 NA non-coding downstream 139308 31504079 ~ 31504548 (-)
G15976 NA non-coding downstream 154020 31489261 ~ 31489836 (-)
G15962 NA non-coding downstream 162455 31476843 ~ 31481401 (-)
G16024 NA non-coding upstream 39883 31693816 ~ 31697608 (-)
G16026 NA non-coding upstream 45203 31699136 ~ 31699400 (-)
G16043 NA non-coding upstream 64967 31718900 ~ 31720036 (-)
G16069 NA non-coding upstream 115797 31769730 ~ 31771274 (-)
G16154 NA non-coding upstream 551790 32205723 ~ 32206877 (-)
AMCG00016815 NA other downstream 255588 31380547 ~ 31388268 (-)
G15787 NA other downstream 1114356 30526292 ~ 30529500 (-)
G15706 NA other downstream 1441505 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2418269 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2858349 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 607616 32261549 ~ 32267968 (-)
G16247 NA other upstream 769125 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 843574 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1522143 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1737856 33391789 ~ 33434651 (-)

Expression


Co-expression Network