XLOC_006155 (atl1)


Basic Information

Item Value
gene id XLOC_006155
gene name atl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36764715 ~ 36784400 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012116
ATGTTCGCTTCAGATGAGAATGAGCCTCCATCACTGGCAGCTGATTTCCAGCATCGCATTCGTCTCATGAACGCTGCTTAAATCCGACCCGACCCCGAATACTGACCAAAACAACCAGCGCGACATGGCACGGGACAAAAAGGACAGAGATAGCTGGGGGTCTTTCGTGGATAAGAACGTGTATGACTGGAGCTCTGAGGAGGAGGAGGCCGACGGTCGGGCGCGTCCGGTGCAGGTGCTGGTGGTGAAAGATGACCATACGTTTGAGCTGGACGAGGCAGCGCTCAGTAAGATCCTGCTGTCCGAGGAGGTCCGAGACAGAGAGGTGGTGGCCATTTCTGTGGCAGGAGCCTTCCGGAAGGGCAAATCCTTCCTCATGGACTTCATGCTGCGCTACATGTACAGCCAGGCCAGTGAAAAGTGGTTGGGGGATGCTGAAGAGCCGCTGACAGGATTCTCATGGAGAGGAGGATCAGAGCGGGAGACCACCGGAATCCAGATCTGGAGTGAAGTCTTCCTGGTGGACAAACCAGACGGTAGCAAGGTGGCAGTGCTGCTAATGGACACACAAGGAACCTTCGACAGCCAGTCCACTCTCCGTGACTCAGCTACTGTATTCGCCCTCAGTACCATGATCAGCTCTATGCAGGTGTACAACATATCCCAGAATGTTCAGGAAGACGATCTTCAGCATTTGCAGCTCTTCACCGAATATGGCAGACTGGCTATGGAAGAAACATTTCTCAAACCGTTTCAGTCACTGATCTTTCTGGTGCGGGACTGGAGCTTTCCATACGAGTTTCCTTATGGACAGGAAGGAGGAATGAAATTTCTGGAGAAAAGATTAAAAATCTCAGAGAATCAACACGAGGAGCTGCAGAACGTGAGGAAACACATCCATTCGTGCTTCACCAACATCTCCTGCTTTCTCATGCCCCATCCAGGACTCAAAGTGGCCACAAACCCCCATTTTGACGGCAGATTGAGGGAGATCGATCAAGAGTTCATCAATAATCTGCAAGTGCTTGTTCCGTGTTTACTACGCCCCAAAAACCTGGACGTAAAAGAGATCAATGGAAGCAAAATCACCTGCCGTGGACTCGTGGAGTATTTTAAGGCGTATATCAAGATTTACCAGGGAGAGGAGCTGCCACATCCAAAATCCATGTTACAGGCCACAGCAGAGGCCAATAATCTGGCAGCAGTGGCTGGAGCTAAAGATCTGTACAACAGGAAGATGGAGGTGGTGAGTGGAGGAGATCGTCCTTTCCTCGCCCCGAGTGAACTTCAGGCACGTCACCTGGAGATCCGCGAGGAGGCGTTAGCATTATTCCGCAGTGTGAAGAAGATGGGTGGCGAGGAGTTCAGCCGGCGTTACCTGCTGCAGCTGGAGACCGAGATCGATGAGCTGTTCGTTCAGTACATCAAACACAACGACTCCAAGAACATCTTTCACGCGGCTCGGACACCCGCCACGCTCTTTGTGGTGATCTTCGTGATGTACGTGGCCGCAGGAATCACAGGCTTCGTGGGAGTGGATGTCATCGCCAGCGTCTGCAACATGGTGCTGGGGTTTGCGCTCATCACTCTGTGCACCTGGGCTTATATTCGCTACTCAGGAGAATACAGAGAACTGGGCGCGGTCATCGACCAGGTGGCAGGAGCTCTGTGGGATCAGGCTCTGTATAAGCTGTACAGCGTAGCGGCAAACCACAGGCAGCTGTATAATCATGCCTTCCCTGGACACCAGAGCGACCAACAGCCCGAGCAGGACAAGAAACGAAACTGACCGAACACAGCTTGTGGACAGAGACAGTAGAGCGTACGTACAGtcaaagagagaaagagacgcGGGACAGTTCTCCATCTGGTCACATTCACACAACACAGAAACATCATCCTGCACCTACAGCTCAGGCCCAGAGTCACATGATGAGGAAAATCAGACCCCGAAGAGAGTCTGCAAACATCCAGGCTGACCTGCAGTAAAACAACGAGTCACAGTATTAGTTCTGCCGCTCATCTTCTCACTGTAAATACGGTTTCTCTCTTTGACACTCACATGAAAGCAGTCTGTTCTTCTTTTGTAATGGATGTTGTTCGTTGAGTTCAGTGCTATTTATAAGGGAATAAAATACTACATGTTTAAAACACAA
>TCONS_00012117
ATGGCACGGGACAAAAAGGACAGAGATAGCTGGGGGTCTTTCGTGGATAAGAACGTGTATGACTGGAGCTCTGAGGAGGAGGAGGCCGACGGTCGGGCGCGTCCGGTGCAGGTGCTGGTGGTGAAAGATGACCATACGTTTGAGCTGGACGAGGCAGCGCTCAGTAAGATCCTGCTGTCCGAGGAGGTCCGAGACAGAGAGGTGGTGGCCATTTCTGTGGCAGGAGCCTTCCGGAAGGGCAAATCCTTCCTCATGGACTTCATGCTGCGCTACATGTACAGCCAGGCCAGTGAAAAGTGGTTGGGGGATGCTGAAGAGCCGCTGACAGGATTCTCATGGAGAGGAGGATCAGAGCGGGAGACCACCGGAATCCAGATCTGGAGTGAAGTCTTCCTGGTGGACAAACCAGACGGTAGCAAGGTGGCAGTGCTGCTAATGGACACACAAGGAACCTTCGACAGCCAGTCCACTCTCCGTGACTCAGCTACTGTATTCGCCCTCAGTACCATGATCAGCTCTATGCAGGTGTACAACATATCCCAGAATGTTCAGGAAGACGATCTTCAGCATTTGCAGCTCTTCACCGAATATGGCAGACTGGCTATGGAAGAAACATTTCTCAAACCGTTTCAGTCACTGATCTTTCTGGTGCGGGACTGGAGCTTTCCATACGAGTTTCCTTATGGACAGGAAGGAGGAATGAAATTTCTGGAGAAAAGATTAAAAATCTCAGAGAATCAACACGAGGAGCTGCAGAACGTGAGGAAACACATCCATTCGTGCTTCACCAACATCTCCTGCTTTCTCATGCCCCATCCAGGACTCAAAGTGGCCACAAACCCCCATTTTGACGGCAGATTGAGGGAGATCGATCAAGAGTTCATCAATAATCTGCAAGTGCTTGTTCCGTGTTTACTACGCCCCAAAAACCTGGACGTAAAAGAGATCAATGGAAGCAAAATCACCTGCCGTGGACTCGTGGAGTATTTTAAGGCGTATATCAAGATTTACCAGGGAGAGGAGCTGCCACATCCAAAATCCATGTTACAGGCCACAGCAGAGGCCAATAATCTGGCAGCAGTGGCTGGAGCTAAAGATCTGTACAACAGGAAGATGGAGGTGGTGAGTGGAGGAGATCGTCCTTTCCTCGCCCCGAGTGAACTTCAGGCACGTCACCTGGAGATCCGCGAGGAGGCGTTAGCATTATTCCGCAGTGTGAAGAAGATGGGTGGCGAGGAGTTCAGCCGGCGTTACCTGCTGCAGCTGGAGACCGAGATCGATGAGCTGTTCGTTCAGTACATCAAACACAACGACTCCAAGAACATCTTTCACGCGGCTCGGACACCCGCCACGCTCTTTGTGGTGATCTTCGTGATGTACGTGGCCGCAGGAATCACAGGCTTCGTGGGAGTGGATGTCATCGCCAGCGTCTGCAACATGGTGCTGGGGTTTGCGCTCATCACTCTGTGCACCTGGGCTTATATTCGCTACTCAGGAGAATACAGAGAACTGGGCGCGGTCATCGACCAGGTGGCAGGAGCTCTGTGGGATCAGGGAAACACAAATGAGGCTCTGTATAAGCTGTACAGCGTAGCGGCAAACCACAGGCAGCTGTATAATCATGCCTTCCCTGGACACCAGAGCGACCAACAGCCCGAGCAGGACAAGAAACGAAACTGA
>TCONS_00012118
CTCTTTGCAAACTCAGCAGTACGGGAGGGTCTTTCGTGGATAAGAACGTGTATGACTGGAGCTCTGAGGAGGAGGAGGCCGACGGTCGGGCGCGTCCGGTGCAGGTGCTGGTGGTGAAAGATGACCATACGTTTGAGCTGGACGAGGCAGCGCTCAGTAAGATCCTGCTGTCCGAGGAGGTCCGAGACAGAGAGGTGGTGGCCATTTCTGTGGCAGGAGCCTTCCGGAAGGGCAAATCCTTCCTCATGGACTTCATGCTGCGCTACATGTACAGCCAGGCCAGTGAAAAGTGGTTGGGGGATGCTGAAGAGCCGCTGACAGGATTCTCATGGAGAGGAGGATCAGAGCGGGAGACCACCGGAATCCAGATCTGGAGTGAAGTCTTCCTGGTGGACAAACCAGACGGT

Function

symbol description
atl1 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon guidance; determination of dorsal identity; and negative regulation of BMP signaling pathway. Located in late endosome. Is expressed in brain; primary motor neurons; and spinal cord neural tube. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D and hereditary spastic paraplegia 3A. Orthologous to human ATL1 (atlastin GTPase 1).

GO:

id name namespace
GO:0048263 determination of dorsal identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0051260 protein homooligomerization biological_process
GO:0007411 axon guidance biological_process
GO:0005770 late endosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8003 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon guidance; determination of dorsal identity; and negative regulation of BMP signaling pathway. Located in late endosome. Is expressed in brain; primary motor neurons; and spinal cord neural tube. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D and hereditary spastic paraplegia 3A. Orthologous to human ATL1 (atlastin GTPase 1).

Ensembl:

ensembl_id ENSDARG00000060481

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012116 False 2156 mRNA 0.51 13 36764715 36784400
TCONS_00012117 False 1680 mRNA 0.52 14 36764839 36784033
TCONS_00012118 True 407 mRNA 0.57 3 36770738 36774273

Neighbor

gene id symbol gene type direction distance location
XLOC_006154 dmac2l coding upstream 73006 36680564 ~ 36691709 (+)
XLOC_006153 si:ch211-67f24.7 coding upstream 125746 36633355 ~ 36638969 (+)
XLOC_006152 si:ch211-67f24.7 coding upstream 138623 36613359 ~ 36626092 (+)
XLOC_006151 gmfb coding upstream 157774 36585399 ~ 36606941 (+)
XLOC_006150 TTC9 coding upstream 611143 36144341 ~ 36153572 (+)
XLOC_006156 tmx1 coding downstream 138652 36923052 ~ 36934915 (+)
XLOC_006157 frmd6 coding downstream 173686 36958086 ~ 36997761 (+)
XLOC_006158 esr2b coding downstream 238201 37022601 ~ 37072558 (+)
XLOC_006159 gphb5 coding downstream 488610 37273010 ~ 37289109 (+)
XLOC_006160 NA coding downstream 754253 37538653 ~ 37544321 (+)
XLOC_006149 NA non-coding upstream 769548 35989155 ~ 35995167 (+)
XLOC_006140 CU681845.1 non-coding upstream 1242539 35483618 ~ 35522176 (+)
XLOC_006135 NA non-coding upstream 1779802 34752174 ~ 34984913 (+)
XLOC_006162 BX005106.1 non-coding downstream 889778 37674178 ~ 37674294 (+)
XLOC_006163 BX322660.1 non-coding downstream 1366117 38150517 ~ 38150637 (+)
XLOC_006165 NA non-coding downstream 1441676 38226076 ~ 38284199 (+)
XLOC_006175 NA non-coding downstream 2900071 39684471 ~ 39727464 (+)

Expression


Co-expression Network