AMCG00016827 (tmem98)


Basic Information

Item Value
gene id AMCG00016827
gene name tmem98
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31770926 ~ 31777458 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016827
GGATATGAAGACAAAATCCACACTGTGAGAACCTCAGCCCTGtatcctgtgttgtgtttcaaaGTGAAGTGGAGCACATAAGGCCTAGTTCAATAGTTCTGAATGGAAATAGTAAtggattctgtttttttgtttttcgcaGATGAAAACGTTCCTGTAGCAAACTGAACCAATTTAGTCACCTTGTTGCTGAAACGTCCACGCTGGAGACACAGTGGGCTGCCATGGAGACAGTTGTCATTGTGGCCATCGGCGTATTGGCTACCATTTTCCTGGCCTCCTTTGTAGCTCTGGTGGTTGTCTGCAGGCACCGCTACTGCCGCCCCACTGGCTTCCTGCACCAGTTTGACTCCAAGCCCACGGTGGACCTCATTGGGGCAATGGAGACCCAGAGCGAGCCCTCAGAGCTGGAACTGGACGACGTGGTGATCACCAACCCCCACATCGAAGCCATCCTGGAGAACGAGGACTGGATCGAAGATGCCTCAGGCCTGGTGTCTCACTGTATTGCTATCTTAAAGATATGCCACACATTGACTGAAAAACTTGTGGCTATGACGATGGGGTCAGGTGCAAAGGTCAAGGCCCCAGCCAGTCTCAGTGATATCATCACTGTGGCCAAACGCATCAGCCCAAGGGTGGATGACGTTGTGCGGTCAATGTATCCTCCCCTGGATCCAAAGCTTCTTGATgccagAGCCACCGCCCTGTTGCTGTCAGTCAGTCACCTCGTACTGGTGACCCGGAATGCCTGTCACATGTCCGGTAGCATGGACTGGATTGACCAATCCCTGAACGCCGCCGAGGATCACATGACCGTGCTGCGGGAAGCGGCACTGGCGTCCGAAGCGGACAGGAACCTGCCGGGCACAGAGGCGTTCCGTCAGGAGCAGTCGGCTATATAGATCACCCCATGGAGACCCCAgaatgcaaagcaaagcaaaaacactTTTTAGATAATTTTCGCTTTTGGTCtcaatatattgtaaatgctGGAGTTGAAGGCTCTcccattttgtatgtttatgtttaacACTCCGGCGTGAAGCGGCCcatgtcataaaataaatgtttcacattTCATGAAAAGAGCAAAATCAAATCGATCAAAAGGGGGTTTCACCATTATATTGATAAATTACATACTAATCgaacatttgttatttaacGGAACAGGTCATCGTTAGCATtgtccccccaaaaaagagGGGAACCCCCCCCCTTCCATAAGACAGGTATTGGCTTATGACATTTGAAATTGCTCACAGAAGCAATACAGTCTAATAGTTATTTTGATTAGTATTTCAGATTCAATTATGTAGTTGTTTAATTGGACCAATGGAATAGTTTTGTTGTCAATTTCTGAAGTCCATAATGAAGCCTGCAAGACTAGGGTCCAGGGGGTCTGGGGTTTGCAGCACCACTAAGCTGCACAGAGCCGGTCCTGTTCTATGTGGCATATATAGCATCAATGTATAGGTTTTCACATTCACTACTGCAGTTCACTCACTGGTAAGTAAGCACATCTGATTGGAGGCTCTCTCTACAGAATGCATACTCTTAATTttgtatatacactatatatatttaaatatttaatctttgtGAACAATATAATGTACATCCCTCCTTACTACTTATAGAGGCTTACAAGTCTGGACAACCTTGTGAAAGCCTAAGTACAAGGCTCATCACTGGTAAGGCAGACTTTCCTTGCTCAATCCACACTATACCGATTTGTTAAAAGCATAATCTTGATTTTAAGTCTTTGcttatttaaatagaaaaataaaataaaaattgaatagTCTTGTATCTTCATGTGACTGATAATTAACCGTCATAAACAAACCCAAGAACAATCGAGCCTTCTTTTACTTAGACACTGATAAAAGTATCACTTGTAGTTAGCATAAGTGGGAAATAAAGTGTTAAACGTCACTGTCACAAGATGGATTATGCATTGTAATCCATTCTTGACAAAGCTACAGAAAGTGGTAAATCCAGCGGGGAAagtagggggaaaaaacaggTCAGGCTGAATAATTTCAATGGAATGTGCTGGTGGCATTTACAATGATGTGAACAAGGTGTTTGAGCGACTCACTAGAGAATTTGTGTAACAGATCACTGGACTAGACAGTGCAAAAACTTGAAGATTTACTGTATACCACAGTCCATACATTGGAGCATGCATATTCAAATTAGAAGCCAACAGActacttaaaaaagaaagaagtacatttaataaagcaCCATTTGTGCATTAGATCCCATTAcacaaaagaaatacagatgtattgtttcaaatgagCGTAACTTTTCAACAGTAATATAACTTGCAAATAGAAATAAAAGTGATAGAATAATACTGTCATATAGAACATTGTGTAGAAATGCACTGTAATCATATTAGGTGAAAATAACCtcatttttgttgtattcaataattgttttgttagcaCTCCCTTGTGTTACTGGATACTGTAAACCTCTCTGttactgcattattttttttactactgaaattcacattttcctACCTCCAGTAGAGCTGTACaggtaaataaatgtttcttagCAAAATCATCCCAGTTTGTCTCATTCTGCAATTTCTAGCAACTGTAGTACAGAAAAACGTTCACTGTGATGGCAATGTTTCTTCATCAAATGctgaagaaacaaagcaaatttGAGGGCTTAAGCAAAAGGTTTCCCTTTATTATGAGGgtattttaaaaggtttcagTACAAATTACCACGGGCAGCATTCAGCCTCATTTGGCAAAATAATCTGTGTACTCTTATGTGacacaggaaattaaacaaCATGACCGTTGCAGATCCAGTTTGAACAGTGTGAGgcttttcttctgtttatatTTCCATGTTGCCCACAAGAGGGCACCCCTTAGACAAGACAaccttgttttaaaatcaacattaaTCAGAAATTAATGCATTCTTTCAGCACAAGCGTTTCTGTTGAAGATTAACTACATGATCACTATTACAGAAGACAATCATAATAACCACATCAGATGCATCAATAACATTTTGAGTTCCGTGATGATTGTTGGGTGAATTAGACTTGAACACCACTACAGCTCAAACTTGAAATGCACTAGAATCAAGTTTTTGTAACGGCAGTTTATCTGTTGTCTTACTATGTCATATGTTTTGAAGGACAGCATGCAGTGAGCACAAGCAATTCACATAGCAGGCAGAAGTGTTTGCCACATTCAGAGCAATTCTGTAATGTACCAAACAccttgccatttatttatttatttattatcatttaaccaatagattttttttttttgtacatactTGTATATGTCCATGGCTTGAAGATAGCTAATTTGTCTAATAACACTCAAgcataataatgaacaaaacacaagaacCAAGGGAAATAAGTGTAAATGCACATCTTTGGTTGAAGTTAGTAGTGTCTAAAAATATTCCTAATAAAATggaattaaattgatatttacattgtaaaattCAGAGCccttcttttgtgtttgtttgttaggcgtttggttttattttccctccCAGAAGTGCCAGGAAGTTTGaacaattacatacaaataatatatatttatacatatttatatatcaggTTCTTTTACAAAATTGCATATAGTTTTGATATAATTTGAAACAGCCCCTCTTTCCCTAATGTTTGTCAGTCATCCCCAATTTATTTGGCTTCAATAAAGAACCATTTGTAAAGGAACTACATGTAAAAGACACTCACCCTTTCAAAAGATACACTCGGTTATagactatacatttaaaatttgtCACTTtacagaaaatgcttttttaaaatacaaatacaaaatagtgcagtgcatttaataaaataatattttgtagaaTAACGTATTGTTgctttttgcttgttttccatttttccttagtttttttttttttttttttttttttttttttttttttttttttttagaagagTCCTTTGCTTTTTTTCAGGTTAATTTGTTTCCAGTTAG

Function

symbol description
tmem98 Predicted to be located in endoplasmic reticulum membrane; extracellular region; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in nanophthalmos. Orthologous to human TMEM98 (transmembrane protein 98).

NR:

description
PREDICTED: transmembrane protein 98

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016827 True 4025 mRNA 0.38 6 31770926 31777458

Neighbor

gene id symbol gene type direction distance location
AMCG00016832 NA coding upstream 69300 31700472 ~ 31701626 (+)
AMCG00016828 NA coding upstream 76175 31687002 ~ 31694751 (+)
AMCG00016825 NA coding upstream 133881 31635059 ~ 31637045 (+)
AMCG00016821 NA coding upstream 136164 31611617 ~ 31634762 (+)
AMCG00016822 NA coding upstream 179389 31580142 ~ 31591537 (+)
AMCG00016836 NA coding downstream 247714 32025172 ~ 32034991 (+)
AMCG00016845 NA coding downstream 297293 32074751 ~ 32084572 (+)
AMCG00016844 NA coding downstream 312576 32090034 ~ 32139763 (+)
AMCG00016842 mpp3,LOC100693772 coding downstream 394414 32171872 ~ 32196229 (+)
AMCG00016839 naglu coding downstream 421490 32198948 ~ 32206874 (+)
G16037 NA non-coding upstream 15499 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 126411 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 266374 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 294708 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 737605 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 484253 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 660796 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 1080093 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 1204321 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 1402247 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 19813 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 39480 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 277822 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 709781 31059340 ~ 31061145 (+)
G15659 NA other upstream 1534085 30236454 ~ 30236841 (+)
AMCG00016841 NA other downstream 474350 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 721598 32499056 ~ 32503372 (+)
G16289 NA other downstream 1078903 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1542686 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1852554 33630012 ~ 33650080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04640883_04644188 TMEM98 coding CI01000046 null 4639233 ~ 4644521 (-)