AMCG00016828


Basic Information

Item Value
gene id AMCG00016828
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31687002 ~ 31694751 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016828
GGAGAATGTCATCCGATGGGTTTTCGGCTCTGCACGGTGTTCAAGCCCAGGACGTGGAGGATTAGGCAGTTAAATGAAGCACAGAATAATTCGCAATACAGTCTTTACCGGCTATCCTTCCAGTGTTGCTCTCGGACTGTACGTAGCCACACTGACACTAATGCCACTTTGAGCAGATTGATATGAGCGCGGCGAGGCGGCAGCGCGGAAGACTCCCTTACCCAGGTTTGATATCAAGCGGCCGCAGTCGGGAAGACACGCCGGTGTGCGTACGTGGTGTGTCATCCGGAGATGCCCCAGCGCGGCCCGACTCAGACGCTCCCGGCCGGGGTGCCCGCTGCGCCGATGCCCGGGTCGCAGGAGGACTGTCACAGGCGCTTCCAGGCGGCGGTGGATGTCATTCAAAACCTGCCTAAAAACGGCTGCTACCGGCCCTCCTATGATGTGATGCTGCGGCTCTACAGCCTCTACAAGCAGGCCACCTGTGGCCCCTGCAGTCTGTCCCGCCCGGGATTCTGGGATCCTGTTGGTCGCTACAAGTGggATGCCTGGCAACGGCTGGGGACCATGAGCTCTGAGGCAGCCATGGTGGCATACGTGGATGAGATCAAGAGGGTGGCGCGGGAGGTAATTGACTCAATGCCCATGACAGACAAGATGGCATCCTTTTTCCACTACTTTGAGCCTCTATACCTTGTCATCCACGACATGCCCCAACCGCCAGAGGCGCTGCTGAGGCTCAGGAAAGGGCCAGAGCTGGACCGCATTTTGAGAGTGAAGCTGAGCGAGGAGTTACAGAGTCTGGGGAATGGAGAGCTGCTGGCAGGGCAGGGCCCAGTGGGGAGGACTGACCTTCTGGAGCGAGGCTGTGGTGAGGCTGACTGCCGTGTATCTCTCCGTGCTGCAGAGTCCCTGTCCGAGGGCCCTGTGGTGTCCAGTGACTCGGAAAGCGAGGTCTTCTGTGATTCACTGGAGCAGCTGGACCATGACAAGGGCCTGCACTCGCTATGGAGTCCTGACAAAAACCACACCCCCGTCACGGAGGCAACTCAAATGGGCATGGGCCGAGGCGGAGAAGGGGTAGACCAAGGAAAGGGACAGCCAATGAGGAGGAGAGGTTCCCCAAGAGGAGTAAACCAGCGACGCAGAGAGGACACAGgCTCCAGGGACCAGGCTGCGTCTCACCCGACTGAAAGGGGTCTGGCGGGGGGCAGAGGTGAAGGAGGGGCAGGGGGCCAAGGCGGCGGTAAAAGAGGACCCGAGAGAAAGCAGGCGGGCGAGGTGCAGGAGCAGATCGCACTGGCGCTGCAGAGACTCAGAGAGGACATGCACGgatcAGGAGTCTTGCAGGAGAAGCTCTGGTCCACATACAACTCCAGCAAGAAAGGTAAAGCCCAGAGGAGAGAGGAGCAGGCCCTTAGGCTTGATGATGGAACCGGGTGGTGTGGGCTGGGCGTCTCCGGCCGCactcttctcttcctcctgctctggCCTCTGCTGGCCCAGGGGCTGCTGGTCCTGGTGCGGCGCCGCCACAGGAGGATCTGAACTGAAGTTCTACAACCCCCACGTGAGGCAGACCGGAGCGCTGCAGTCAGGGAGCGCCAACAGACGCTtaTCCTGGCAAGGGGGTGGCCTTGAGGCTTTGAGGACCTTTGAGGACCTTTCAATTTCTGTTCACTTGGTTTCCTGTTTGAACTGACTAACATATTCCAGAATAACACTGTGCTTCTGAACTTCTGAGAGGGGGATGAGAGGAAAGGCAGGGGGAAGTGTTTCAGTGTTACCTCATTGTAGTTCACTTGGTACCTCTCTACTCAGTTTCCCTTCCTGTCTGTGAGCTCTGAGAGTTTTAAAAGaagctgcttttatttaaatcattacttGTATGGTCATATATCGAAGAGTCACATTGCAcatatgtgtgtacatatttccAGGGTCATTAATCTGTGTATTTTAGCAGTTTCCATCTTGAGGGAATGgaacttacatttaaaaatagggaAGGAGGTTCAACCTAAGAAATGGCCTTGTTTAAAACATGCACTTTTACATGGTTACTATctgaactgtgtttttaatagtgCATTGAAAGCggtacattttaattccagctCAATGTGTCTTGACTAAGAGACTGCATCGGCTCAATACTGTGAAACGGCAGAACGACGCACAAACAATCTCAATGAAGACTTTTATACCTGTGTGACGGAGGGAGTCAGAGGTTGTAGTTTTCTGAAGGTGCGTTTTGTTGTGAAGAAAGAGCCAAGGGTCAAATATGCTGCACTGAAATGTgg

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016828 True 2303 mRNA 0.55 12 31687002 31694751

Neighbor

gene id symbol gene type direction distance location
AMCG00016825 NA coding upstream 49957 31635059 ~ 31637045 (+)
AMCG00016821 NA coding upstream 52240 31611617 ~ 31634762 (+)
AMCG00016822 NA coding upstream 95465 31580142 ~ 31591537 (+)
AMCG00016826 NA coding upstream 117575 31566902 ~ 31569427 (+)
AMCG00016818 eftud2,LOC102798265 coding upstream 163340 31507551 ~ 31523662 (+)
AMCG00016832 NA coding downstream 5721 31700472 ~ 31701626 (+)
AMCG00016827 tmem98 coding downstream 76175 31770926 ~ 31777458 (+)
AMCG00016836 NA coding downstream 330421 32025172 ~ 32034991 (+)
AMCG00016845 NA coding downstream 380000 32074751 ~ 32084572 (+)
AMCG00016844 NA coding downstream 395283 32090034 ~ 32139763 (+)
G15995 NA non-coding upstream 42487 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 182450 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 210784 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 653681 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 679996 31005897 ~ 31007006 (+)
G16037 NA non-coding downstream 60291 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 566960 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 743503 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 1162800 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 1287028 32981779 ~ 32982330 (+)
AMCG00016820 NA other upstream 193898 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 625857 31059340 ~ 31061145 (+)
G15659 NA other upstream 1450161 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1573718 30109599 ~ 30113284 (+)
AMCG00016772 g6pc other upstream 1603474 30072938 ~ 30083528 (+)
AMCG00016829 NA other downstream 6918 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 33805 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 557057 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 804305 32499056 ~ 32503372 (+)
G16289 NA other downstream 1161610 32856361 ~ 32857440 (+)

Expression


Co-expression Network