AMCG00016829


Basic Information

Item Value
gene id AMCG00016829
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31701669 ~ 31731446 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016829
ATGCAAGGCCTGACACACAAAGCCGCACTGTCGTTTGGTCCCAGGAGAGCAGCTGAGGCGGATTTCAGACTCCAGCTCCCCCGTGTGGCGCAGACGACGCACCGGCGCCGGATTGTGCTGAGCATAGGCTCGCTGATGGCCAAGCTGCTAGTGAACGCTGAGTTTATAAAGCATCTACTTTATAAAGAAGGTTGTGGCAAGAGAGAGACACTTTATATAAGGGCCAGGAGCCACAGCACCCTGCCACTTTGTCAGATGTCAGACTCTCAGCACTCAGCCCCCGACATGGAGATGACAGCCATTCCTGATGCCATTCAGAGGCCACCGATTTATAGACACACAGATAATCTACCTCCCACGCAGCCACAGGAGGATCTGACCAAGAAAGCTTTCGACTTCCCAGAAGAATCTGACAACATTCAACATTACCACCAGAGACATGACACGTCTCACTGCAACGACCATTCAACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGTCAAATACTCAGTTTCTGTAAacaatatagatatacatttctCAGTAGAGGATACGAGACCGGTATCAGGATGGACTCAAGTGTGTGCCACCTGGGAGTCAAGTAGTGGAAACGTTACGATATGGGTGAATGGGAAATCTAGTAGCAACCAAATGAAAACTGGGCAGGTGATTCCTCTAATGAATCATTCCATTGTCCTAGGTCAGGACCAGGACAGTTTTGGTGGGTTTTTTAACGAGTGGAACAGATCACAGAAGTCCACATGTGGGATTATGTGCTTTCAGGCTCAACCTTGGCAGGAGACCAAACTGAAAGCACCAGAGTTCTAG
>TU19913
GGGGAACAATAGGGGGGTTTATTCCTAGTGTAGTGCAGCTCAATTCCAGCTCAATTTCAGTTCAATTTCTCTGACTTCTGAATTCAACACGACTTACATGGACTACTTCCCAGTTCCATCAATTACACTTTATATAAGGGCCAGGAGCCACAGCACCCTGCCACTTTGTCAGATGTCAGACTCTCAGCACTCAGCCCCCGACATGGAGATGACAGCCATTCCTGATGCCATTCAGAGGCCACCGATTTATAGACACACAGATAATCTACCTCCCACGCAGCCACAGGAGGCTCCTGTGAAGAGCACCAACAGTACATTAAGTTACTATCGACTTGCTGTGCTGCTTCTTACCATCCTGTGCTGCCTACTCTTGGGTGCCACTATAGTGCTGGGAGTTCTGTaTAATTTAGAATGCAATTGAAAAAGATGCCTTTTCTAATTCTCTGTTGGAGGAGAAACATCTGACCAAGAAAGCTTTCGACTTCCCAGAAGAATCTGACAACATTCAACATTACCACCAGAGACATGACACGTCTCACTGCAACGACCGTCTGCCTGAGATTCAACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGTCAAATACTCAGTTTCTGTAAacaatatagatatacatttctCAGTAGAGGATACGAGACCGGTATCAGGATGGACTCAAGTGTGTGCCACCTGGGAGTCAAGTAGTGGAAACGTTACGATATGGGTGAATGGGAAATCTAGTAGCAACCAAATGAAAACTGGGCAGGTGATTCCTCTAATGAATCATTCCATTGTCCTAGGTCAGGACCAGGACAGTTTTGGTGGGTTTTTTAACGAGTGGAACAGATCACAGAAGTCCACATGTGGGATTATGTGCTTTCAGGCTGTGAGATAACTGCTCTGAATGCAGGGTTGTCTGTCACCACGNNN

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016829 False 873 mRNA 0.48 7 31701669 31731446
TU19913 True 972 TUCP 0.59 5 31721939 31727017

Neighbor

gene id symbol gene type direction distance location
AMCG00016832 NA coding upstream 43 31700472 ~ 31701626 (+)
AMCG00016828 NA coding upstream 6918 31687002 ~ 31694751 (+)
AMCG00016825 NA coding upstream 64624 31635059 ~ 31637045 (+)
AMCG00016821 NA coding upstream 66907 31611617 ~ 31634762 (+)
AMCG00016822 NA coding upstream 110132 31580142 ~ 31591537 (+)
AMCG00016827 tmem98 coding downstream 39480 31770926 ~ 31777458 (+)
AMCG00016836 NA coding downstream 293726 32025172 ~ 32034991 (+)
AMCG00016845 NA coding downstream 343305 32074751 ~ 32084572 (+)
AMCG00016844 NA coding downstream 358588 32090034 ~ 32139763 (+)
AMCG00016842 mpp3,LOC100693772 coding downstream 440426 32171872 ~ 32196229 (+)
G15995 NA non-coding upstream 57154 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 197117 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 225451 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 668348 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 694663 31005897 ~ 31007006 (+)
G16037 NA non-coding downstream 23596 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 530265 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 706808 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 1126105 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 1250333 32981779 ~ 32982330 (+)
AMCG00016820 NA other upstream 208565 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 640524 31059340 ~ 31061145 (+)
G15659 NA other upstream 1464828 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1588385 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 1593942 30022607 ~ 30107727 (+)
AMCG00016841 NA other downstream 520362 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 767610 32499056 ~ 32503372 (+)
G16289 NA other downstream 1124915 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1588698 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1898566 33630012 ~ 33650080 (+)

Expression


Co-expression Network