AMCG00016830


Basic Information

Item Value
gene id AMCG00016830
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31728556 ~ 31751113 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016830
atggaaaaaataaagacattcaaaTTTACTCACAGACCTGCACTTCTTATGCTTATAGATCTGACCAAGAGAGCTTTCTACTTCCCCGAAGAATCTGACAACATTTACGTGAGAGTAACTCCAAAGACACTGTCACGTCTCACTGCAACAACAGTCTGCCTGAGATACAACTCTAATCTGACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGGCAAATACTCATTTACCGTAAACAATATAGAAACAAATTTGTCAGAAGAGGATACTAGACCAGCATCAGGATGGACTCAATTAGCAAATTTGAACGGTCTGACCCTTCAGGAAAACGTGAGGCAAGCTACAGCTGTGCAGAAGGCACGCCAGGGGGAAGCTGTACATTTCCAGTGCGCTTACTTAAACAAGGTCCAATCCTTTTATCTGTTCTGGTATGAGCAGCTTCCCAACAAACCACCCCAGTACCTGCTTCAGAAATGGTACCTCAAAGACCAATATGATGAGCCCAAATACAAGGGGATCTTCGAAACAATACTGGACAAAGATAATAAATTGCACACCTTAAAGCTGCTCAAAGCCAAGCTGCGTGGCCCAGTGTCTTACCTGTGTGCCCTAAACGATGGGGGAAATGAACAACTGCATTTTGGAAACGGCACCAGACTGGACGTGCTTGCAGAGACAGAGTGTGAACTCTCCACTTACACACTTCAGCCGAGCACAGGCGGCCCCGGGGCTTGTCTGGTGACCGGCGTGGAGCCAGGAGTGAGCAGGCTGGAGCCCTCGGTGTTGGACGGAGAGTCATGTTACAGCGTGGTGGCTGTTTTGCCACAAGAGGACTTTGACTGTGCAGTCCACAATGAACAGGgGGACTCATGTTTTGATTATCAACTGGcagATGAAAAGACCAACTTCTTGTCGTTGACTGTGATGGCTCTCAGGATTATTTGTCTGAAGAGTGTAATTCTTGGGGGACTACTGACACTTCAGATTCACATGGCAAAGTCAACCACGCTGAcctag
>TU19916
CTTCTTTATAAAGTGGGTGTTTTATAAACTCCGAGTTCACAGACAACTCAAGTCATCCTGCATACCAATAATGGAGCTACAGAACACATACAGTGTACCGCAGAGAAccacagaaaatatatacacaacttTACACCAATCCACAGATGGATTCCAGTCTGATTTGATTAGTAAAGTGCAGAAGGAAAAACAGGACTCAATATCATCCACATTCCTCTGTTCTAAAGATCTGACCAAGAGAGCTTTCTACTTCCCCGAAGAATCTGACAACATTTACGTGAGAGTAACTCCAAAGACACTGTCACGTCTCACTGCAACAACAGTCTGCCTGAGATACAACTCTAATCTGACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGGCAAATACTCATTTACCGTAAACAATATAGAAACAAATTTGTCAGAAGAGGATACTAGACCAGCATCAGGATGGACTCAAGTGTGTGCCACCTGGGAGTCN

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016830 True 1059 mRNA 0.47 7 31733960 31751113
TU19916 False 526 TUCP 0.39 3 31728556 31734316

Neighbor

gene id symbol gene type direction distance location
AMCG00016832 NA coding upstream 26930 31700472 ~ 31701626 (+)
AMCG00016828 NA coding upstream 33805 31687002 ~ 31694751 (+)
AMCG00016825 NA coding upstream 91511 31635059 ~ 31637045 (+)
AMCG00016821 NA coding upstream 93794 31611617 ~ 31634762 (+)
AMCG00016822 NA coding upstream 137019 31580142 ~ 31591537 (+)
AMCG00016827 tmem98 coding downstream 19813 31770926 ~ 31777458 (+)
AMCG00016836 NA coding downstream 274059 32025172 ~ 32034991 (+)
AMCG00016845 NA coding downstream 323638 32074751 ~ 32084572 (+)
AMCG00016844 NA coding downstream 338921 32090034 ~ 32139763 (+)
AMCG00016842 mpp3,LOC100693772 coding downstream 420759 32171872 ~ 32196229 (+)
G15995 NA non-coding upstream 84041 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 224004 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 252338 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 695235 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 721550 31005897 ~ 31007006 (+)
G16037 NA non-coding downstream 3929 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 510598 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 687141 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 1106438 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 1230666 32981779 ~ 32982330 (+)
AMCG00016820 NA other upstream 235452 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 667411 31059340 ~ 31061145 (+)
G15659 NA other upstream 1491715 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1615272 30109599 ~ 30113284 (+)
AMCG00016772 g6pc other upstream 1645028 30072938 ~ 30083528 (+)
AMCG00016841 NA other downstream 500695 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 747943 32499056 ~ 32503372 (+)
G16289 NA other downstream 1105248 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1569031 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1878899 33630012 ~ 33650080 (+)

Expression


Co-expression Network