AMCG00016839 (naglu)


Basic Information

Item Value
gene id AMCG00016839
gene name naglu
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32198948 ~ 32206874 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016839
TGTTCTCAAGAGTTTTGGAGAGTACAGTTAGGAGATGCTCTGTATCGCAGGTTAAAATACACaacttgttttgtgttgttgctgcATTGTATTGCACGGACACGGGTTTCATTTTTCCATATTACAATGCCACACACGCGTCCGTATATATATCCCATCGCGTTAATCCTCATAGGCGCTGTCCTCTTGGCGGACTGTGAATTTGAGACACTGGCTCATCTGAAGCCGCAAGCCAGCGATGAAACCCAAGCGCGGGCAGTTGGCGACCTCCTGAAGCGTCTGATCGGGAACAGAGCCTCGGAGTTCATCGTGTCCGTGAATAGGTCCCTGGCACTGGAGAACGGGCAGCAAGACACCTGCGAGATCCGCTCCTCCAGAAATGCCAATATCGCGGTGAAAGGCAGCACAGGGGTGGCTGCGGCCACGGGCATCTACAACTACCTGAAGTACTTCTGCAACTGTCACATTTCCTGGTCGGGAAATCAGCTGAATATCCCGTCGCCGCTTCCCCCGGTCACAGGGACTTTGAGAATCGCCAGTCCGCACAGGTTCCGATACTACCAGAACGTGTGCACTCAGAGCTACTCCATGGTGTGGTGGGACTGGGCGCGCTGGGAGCAGGAGATCGACTGGATGGCGCTCAACGGCATTAACCTGCCCCTTGCGTTTGCTGGACAGGAAGCCCTGTGGCAGGAGGTCTACTTGTCCTTGGGCCTGAATCAGACAGAAGTCGATATGTTCTTCACCGGCCCTGCTTTCCTTGCCTGGAATCGCATGGGGAACTTATTCCGATGGGGCGGCCCTCTCCCCCAGTCGTGGCACGTCAAGCAGCTCTACCTCCAGtacaAAATCCTGCATCGGATGAGATCCCTGGGGATGATCCCTGTCCTACCTGCTTTTTCTGGGAACGTTCCAGAAGCCATTACAAGGATTTTCCCCAAAGCCAACGTGACCAAGTTGGATCCGTGGAGCCATTTTAACTGCAGCTACTCCTGCGCCACCGTTCTGGATCCCCGCGACCCCCTTTTCCAGCGTATCGGGGGGCTCTTCCTCTCCCAGCTGGTCAAGCAGTTTGGCACAGACCACATCTACAACACAGACACCTTCAACGAGATGACCCCTGCCTCGCCGGACCCCTCCTACCTGTCCACGGTCAGTGGGGCTGTCTTCTCCTCCATGACTTCTGTTGACCCCCAAGCAGTGTGGCTGATGCAGGGCTGGATGTTTGTTCATGACCCGGTCTTCTGGAAGCCTGCCCAGATCCAGGCTCTGCTGGGCGGGGTGCCCCTGGGCCGGATGATTGTCCTGGACCTGTTCGCCGAGTCCACACCGGCCTTCTCCCTCACCCATTCCTTCTATGGGCAGCCTTTCATCTGGTGCATGCTGCACAACTTCGGGGGCAACAACGGGCTCTTCGGCACGGTGGAGAGCATCAACCAGGGACCCTTCGAAGCCCAGCGCTACCCCAACTCCACCCTGGTGGGCATGGGGCTGGCGCCAGAGGGCATTGAGCAGAACGCGGTGGTGTACGAGCTGATGAACGAGATGGCCTGGCGCCGGGAGCCCGTCAACCTACAGAAGTGGGTGTCGCTGTACGCAGGGCGGCGCTATGGCAGCGGGCACGAGAACCTGGCGGCCGCCTGGAAGCTGCTCTTTCGCAGCATCTACAACTGCACCGTCCCACACTATAAGAATCACAACCACAGCCCGCTGGTGCACAGGCCCTCCCTGCACATGGCAACCGAGCTGTGGTATGAGCGCAAGGACCTGCTGGAGGCCTGGCGTTTGTTGTACTCTGCTGCCCCTTCCCTGATGGCCGTGGAGACTTTCCGTCACGATCTGGTGGACATCACCCGTGAAGCCCTGCAGCTGCTGGTCTCAGACTTCTACCTGGAGATCCGAGCAGCTTTTCAGAACCACCGACTGCCAGAACTGCTGACTGTTGGTGGGGTCCTGGTGTATGACCTCCTGCCCGAACTCGAGCGGCTCCTGTCCAGCGAGAAACATTTCCTCCTGGGCACCTGGCTGGCACGGGCCCGGTCCCTTGGCCTGGATGCCAAAGAGGCCCAGCAGTACGAGCTCAATGCCCGCAACCAGGTGACCCTGTGGGGCCCCTCGGGCAACATCCTGGACTATGCCAGCAAAGAGTGGGGCGGCCTGGTGGGTGACTATTACGCCCAGCGCTGGAGCCTCTTCGTCAGCACCCTGGTGGAGTGCCTGGACTGCGGGCGTCCTTTTAAGCAGGAAGCCTTCAACCAGGCTGTGTTTCAAGTGGAACAGGGCTTTGTCTACAACCAGCGGAGGTACCCAGACAAACCCCTGGGAAACACCTACGAAATCGCCAAACGGATTTTCCTGAAGTATTTCCCACAAGCCATGAATAGGGTCAGTCCAGCTGCCTGAAGAGAGACTGCTCCTTATTATTAACCCAAAACACCTCAACCACAGTGAGCCTAAAGATCCTGCATGTCTCTTGCTCCTAGAATAAACCAGTTTAGGCAACAGTCTGTGCTTACAACAGTGGCAGGATGATCTAACAGTGTAACTAAGGGGCATTCCTAGTTTCAGTTCTCAAGATATATGAACCTGCCTTGCCCAATTACTGTAGTGTTATGAACACTAATGTATAGgctatatttttattctgtcaGAGCctgattaattgtatatacaaatattctgCATAATCTGatgaattttaaactttttGCTTTTGACTCAGGTGTGTTACAGTATTGCAAACACAGTGTTACAGAGgacatattttatacttttatgtTCCATGCACTGGAACATATCAaatttgattaatattaaaCACCAACAATGCAGAAGCATCAGatttaaactgatttttgtaattttggaTTTCAACAAGGATCTGCATCTgagtgaaacatttttaaaagactcAAATGAACTTGTGAGTGAGACTCGGCGGGGCCCATGCTCGCTCAGAAGATCTCTCCATATCGCTGGGTATTCTGGATTGTCTCGGGATTCTCAAATCACATTGGCTTCTCAAGGAGGTCTTAGGGAATCGAACAAAAAGGGACCAATCTTACCTCTTCCAAAACTTTCTTGTGTAATGTAAGAACCAATATTTGTCTCGAGTTAATAGCAATATGCCTGTGTTCCTGTGTGGTTTGCAGGGTTTGCAGTAAGTCTAGCATGTGACTGACTTGGCATGGCCAAACAGATGATGATTAAAAGTCACGAcagatgtaaaacaaataagtaagtgaaaaagaaaacgGGGCTGAacgggttttttttttaatgtttgcatttGAGTCTAGTTGGAaatttgtataattgttttgtattgtatcacTGCCAAGGTCAAGATTGAGCAGCTAACACAGAACTATTTTAGGACTGCATTTACATTGAGTGTAAGGTATATTTCATAGCAGGGAGCATATTCGCAAGCAAGCAAACTCAGAAAGACTTTAACGCGGTCCATATTTCAAACTCTGAGCCAGTAGTCTCCTCTTAATTTGTTTGGCGAAGGAACTGAGCAAAAgcccttgttgttgttgttgctgctctGCAGTAAGCCCAGCACCGAGGCCTTGCAGGTCATTCCATATACCTGCACTAGATGGGGCTGCAGGCTTGCTATAGATTACTATCAAAATAACAGTGCCTGTGTTGGGCCTGTTGATGTTGTATCTCTTACTGCATGCGTGTGTTTACTTCCATAGTTCTGTGAAATATACTCTCTGgagtggtgggggggcaggttGATCCATCTTTTGGTTTACAAGTGAGCAGTGCGGATCATGAGTGAGCTCGGCAGTGTAATTGGTGAGAGCTGCATCAGTCCTTCCTGTGCTGCTATAGCCCTGCCGTTTGTGGTGTGGACTCCCCGAGCATGACAGGATTCGGTGGCCTGACTGGGCACAATTTGGGCACACTAATAGAGTCTAGTGTGAAGTGTAGCAGCTGGTCACTTCTCGAGTCCGAATTGGGAAGGAAAAGAACCAGTGAAGCTCACAATCCATTCTGTGTGGAATGGACCTCTTGAGGCAAAGGAATGGAGAAAAGCAGGCAAACCCTTTATGCCATTTTATGGGCACGTTTCTTTTCAGGAATCTATTGGTAATGATAATAGTGGATATACAgtgcatgtctttttttaaatcagttttttattttaattgatttgtgatTCAGTTCCTTTCGGCACTTTTCTTCGAACTGGTGGAACATTTTAACTCGACAGTGCTCACAAAAACCTACCTTTTCATTGTACACTCAAGAGGCTCTTAGGCAGATGAGATATGGCAGTGTAGTACTGCTGGTTCTGTACAAATGGGCTTTCACTGGAGATCCCCGCAGTGCCATTGATGCATAATTGTGTAGTATATCACGATGTACAGGTACTCTGGGCATGTAGATGATATGTGTTTCATCAATCCAGGTGCCCTTTAATGGAAGTACCTCATTAGTTTCTATTCAtgtgatttaaatgaaaaggtTATATCTTTCCTGATATGTCATCCCCTAGTTGATGCGCGCACACAGCCATGCTAGATTGAAGCCAGCgtactgaaagaaaatgtgtggcaGCACGAAAATGCATAGGCACAAACACCTCAGTATCTGGAAGACTGACCTTATGTGGCATTTTGGACTTAATTAAGGTCAATggaaaaaggattttaaaatgacttgacggcatttaaaaaatacttttttaataaatgtatgaatgttgTATACGTGTCTTGGGT

Function

symbol description
naglu Predicted to enable hydrolase activity. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2V; mucopolysaccharidosis III; and mucopolysaccharidosis type IIIB. Orthologous to human NAGLU (N-acetyl-alpha-glucosaminidase).

NR:

description
PREDICTED: alpha-N-acetylglucosaminidase isoform X2

GO: NA

KEGG:

id description
K01205 NAGLU; alpha-N-acetylglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016839 True 4739 mRNA 0.49 6 32198948 32206874

Neighbor

gene id symbol gene type direction distance location
AMCG00016842 mpp3,LOC100693772 coding upstream 2719 32171872 ~ 32196229 (+)
AMCG00016844 NA coding upstream 59185 32090034 ~ 32139763 (+)
AMCG00016845 NA coding upstream 114376 32074751 ~ 32084572 (+)
AMCG00016836 NA coding upstream 163957 32025172 ~ 32034991 (+)
AMCG00016827 tmem98 coding upstream 421490 31770926 ~ 31777458 (+)
AMCG00016840 NA coding downstream 3267 32210141 ~ 32216323 (+)
AMCG00016843 NA coding downstream 18918 32225792 ~ 32245535 (+)
AMCG00016848 tubg1,LOC106601139,LOC107721485 coding downstream 77882 32284756 ~ 32303469 (+)
AMCG00016851 NA coding downstream 187007 32393881 ~ 32434138 (+)
AMCG00016852 NA coding downstream 273790 32480664 ~ 32481807 (+)
G16037 NA non-coding upstream 443521 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 554433 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 694396 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 722730 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 1165627 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 54837 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 231380 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 650677 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 774905 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 972831 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 447835 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 467502 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 705844 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1137803 31059340 ~ 31061145 (+)
G15659 NA other upstream 1962107 30236454 ~ 30236841 (+)
AMCG00016841 NA other downstream 44934 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 292182 32499056 ~ 32503372 (+)
G16289 NA other downstream 649487 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1113270 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1423138 33630012 ~ 33650080 (+)

Expression


Co-expression Network